Methanosphaera sp. ISO3-F5: PXD04_03155
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Entry
PXD04_03155 CDS
T09686
Name
(GenBank) OB-fold nucleic acid binding domain-containing protein
KO
K07466
replication factor A1
Organism
meis
Methanosphaera sp. ISO3-F5
Pathway
meis03030
DNA replication
meis03420
Nucleotide excision repair
meis03430
Mismatch repair
meis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
meis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PXD04_03155
03420 Nucleotide excision repair
PXD04_03155
03430 Mismatch repair
PXD04_03155
03440 Homologous recombination
PXD04_03155
03460 Fanconi anemia pathway
PXD04_03155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
meis03000
]
PXD04_03155
03032 DNA replication proteins [BR:
meis03032
]
PXD04_03155
03400 DNA repair and recombination proteins [BR:
meis03400
]
PXD04_03155
Transcription factors [BR:
meis03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
PXD04_03155
DNA replication proteins [BR:
meis03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
PXD04_03155
DNA repair and recombination proteins [BR:
meis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
PXD04_03155
MMR (mismatch excision repair)
PXD04_03155
DSBR (double strand breaks repair)
HR (homologous recombination)
PXD04_03155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
Rep_fac-A_C
CDC24_OB3
REPA_OB_2
Ssb-like_OB
SHLD2_OB1
POT1PC
Zn_Ribbon_TF
Zn_ribbon_6
Zn_ribbon_RRN7
POT1
DUF2612
DZR_2
DUF5088
zf_UBZ
DZR
Zn_ribbon_15
Motif
Other DBs
NCBI-ProteinID:
WQH64803
LinkDB
All DBs
Position
complement(2408126..2410507)
Genome browser
AA seq
793 aa
AA seq
DB search
MTSENEEYYKERYQEVKDKVEYKDFLKDIEEITIENSESPFITEEQVVNMAVEKYAGREN
IQQTHTNQVQKISSLVEGNGNISIQGRLLSISNIKTFTTKKGREGKVANLTVQDTTGKIR
VVMWTDNMKYMSRINEGDIVKINNLEVRKGYTGDLEVQMRNNSSIQVMPEEVDPELPKFQ
QNITNLGDITEDGEYNVIVRITKIATLREIKKEDRTLKIITIDVMDATGNMEFTLWNNDT
ELVETLELKENDTIKIIKARAQERNGTFSLSNSWNGRIVKGDYDLPEYHQEIFKIGNATE
KDNVTILGVLTKIYDTITFQKNDGTEGHVRSIEVTDDTGSIRVTLWNKETEIAMNKGDII
KIEGGTIEFDDYSGDSYRYNTGWNAAIVLNPDIDEELKEKLEQIKNFEVAKIKDILDIDQ
DEGREVDVIGRILAMNDIREFQRVDGTEGQVRSIELADETGVVRTSLWDDKADINQGLGD
ALKIENARTRLGQGTMELSVGKSSRITIPEEDEITNLPSYQQLEQDRYNDRTISQLEENE
TNTKLRVRVTTINEINTFTRADGRDGKVRAVYVADETGEIQVSLWDDATDVKFTEGSAII
IENPVIQLQENKLRLSISGSSTIRQARPEEAELMPTMHEIENQLFVEKMIEDIEDDDQHI
KVKGNIQEINGEKILYAMCPNCNKRIVQSEEGYICDHCGEKIEEPDYLMIIQTVLQDETG
SITATFFRKQAEELIQTTTDEVIEIFQQTGDESSMSSKIEDLIGHEATIIADAQYNDYNE
DIRLNVRRLVIVL
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgacttcagaaaatgaagaatattacaaagaaagatatcaagaagtaaaagataaagtt
gaatataaagactttttaaaagatattgaagaaataacaatagaaaacagtgaatcacca
ttcatcactgaagaacaagtagtaaacatggccgtcgaaaaatatgcaggaagagaaaat
attcaacaaacacacacaaaccaagtacaaaaaatctcttcattagttgaaggaaacgga
aacatcagtatccaaggaagattgttatcaatctccaacataaaaacattcacaaccaaa
aaaggacgagaaggaaaagtcgcaaacctaacagtccaagacacaacaggaaaaataagg
gtcgtaatgtggacagacaacatgaaatacatgtccagaataaacgaaggtgacatagta
aaaatcaacaacctcgaagtaagaaaaggatacaccggagacttagaagtacaaatgaga
aataactcatcaatacaagtaatgccagaagaagtagacccggaactaccaaaattccaa
caaaacataaccaacctaggagacatcacagaagatggagaatacaatgtcatcgtaaga
ataaccaaaatagccacactacgagaaataaaaaaagaagacagaaccctaaaaataatc
accatagacgtaatggacgcaacaggaaacatggaattcaccctatggaacaatgacaca
gaactagtagaaacactagaactaaaagaaaacgacacaataaaaatcataaaagcaaga
gcacaagaaagaaacggaacattctcattatcaaacagttggaacggaagaatagtaaaa
ggagactacgacctcccagaataccatcaagaaatattcaaaataggaaacgcaacagaa
aaagacaacgtaacaatactaggagttctaacaaaaatatacgatacaataacattccaa
aaaaatgatggaacagaaggacacgtaagaagcatagaagtaacagacgacacaggatcc
atacgcgtaacactatggaacaaagaaacagaaatagcaatgaacaaaggagacatcatc
aaaatagaaggaggaaccatagaattcgatgactactcaggagacagctacagatacaac
acaggatggaacgcagcaatagtactaaacccggacatcgacgaagaactaaaagaaaaa
ctagaacaaatcaaaaacttcgaagtagcaaaaataaaagacatactagacatagaccaa
gacgaaggaagagaagtagatgtaataggaagaatactggcaatgaatgacatcagagaa
ttccagagagtagacggaaccgagggacaagtaagatccatagaactagcagatgaaaca
ggagtagtcagaacatcattatgggatgataaagcagacatcaaccaaggactaggagac
gcactaaaaatagaaaatgcaagaacaagactaggacaaggaacaatggaactaagcgta
ggaaaatcatccagaataacaataccagaagaagatgaaataacaaacctaccatcatac
caacaactagaacaagacagatacaatgacagaacaatcagtcaactagaagaaaacgaa
acaaacacaaaactaagagtaagagtaacaacaataaacgaaatcaacacattcacaaga
gcagatggccgagacggtaaagtaagagcagtctatgttgcagatgaaactggagaaata
caagtatcactctgggatgatgcaaccgatgtaaaattcactgaaggatccgcaataatc
atagaaaaccctgtaatacaattacaagaaaacaagctacgattatcaatatcaggttcc
agtactattcgacaagcaagaccagaagaagcagaactaatgccaacaatgcatgaaata
gaaaatcaactcttcgttgaaaaaatgatagaagacatagaagatgatgaccaacacata
aaagttaaaggaaacatccaagaaatcaacggagaaaaaatattatatgcaatgtgtcca
aattgtaacaaacgaatagtacaaagtgaagaaggatatatttgtgatcattgtggtgaa
aaaatagaagaaccagattatcttatgataatacaaacagtactacaagatgaaacaggt
tcaataacagcaactttcttcagaaaacaagcagaagaattaatacaaacaaccactgat
gaagtaatagaaatattccaacaaactggggacgaatcatcaatgtcctcaaaaattgaa
gatctaataggacatgaagctaccataatagctgatgcacaatataatgattataatgaa
gatataagattaaatgtcagacgtttagtcatagtattataa
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