Methanosphaera sp. ISO3-F5: PXD04_03445
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Entry
PXD04_03445 CDS
T09686
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
meis
Methanosphaera sp. ISO3-F5
Pathway
meis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXD04_03445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meis03019
]
PXD04_03445
Messenger RNA biogenesis [BR:
meis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PXD04_03445
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PXD04_03445
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
RRP4_S1
OB_RRP5_4th
OB_MEIOB_N
Motif
Other DBs
NCBI-ProteinID:
WQH64853
LinkDB
All DBs
Position
complement(2458497..2459060)
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AA seq
187 aa
AA seq
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MFHKENDFVLPGEVLCTYEEYIPSEWTYIEDGFVKASINGRIVIDKDEKTISIQASNPPS
FLKEGDYVIGHITEVKQNKALVTIKMIKGFNRELVTGYKGFIHISKANTDFISSLHEMFK
IGDIVEAKVLNIYGAEYIDLSTSEEDTGVIKAMCTDCRKFMKLDNNQLVCECGKIDSRNI
SSNYGGF
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgtttcataaagaaaatgacttcgttctgcctggagaagtattatgtacctatgaagag
tacataccatcagaatggacatacatagaggatggattcgttaaagcaagtattaatgga
aggattgtcatagataaggatgaaaaaacaatatccatacaagcaagtaatcctccaagt
tttcttaaagaaggagattatgttataggtcatattacggaagtcaaacagaataaagca
ctggtaacaataaaaatgataaaaggatttaatcgagaattagtgacaggatataaggga
tttatccatatatcaaaagctaacactgatttcatatcctcattacatgagatgtttaaa
ataggagatatagtagaagcaaaagtattgaacatatacggagcagaatatatagattta
agcacgtctgaagaggatactggtgttataaaggcaatgtgtaccgattgtcgtaaattt
atgaaacttgataataaccaattagtatgtgaatgtggtaaaattgattcacgaaatata
tcaagtaattatggaggtttttaa
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