Methanosphaera sp. ISO3-F5: PXD04_09805
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Entry
PXD04_09805 CDS
T09686
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
meis
Methanosphaera sp. ISO3-F5
Pathway
meis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXD04_09805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meis03019
]
PXD04_09805
Messenger RNA biogenesis [BR:
meis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PXD04_09805
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WQH63983
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Position
complement(1448583..1449926)
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AA seq
447 aa
AA seq
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MTIEVIAVGGYEQIGKNMTAVKVNDDVVIFDMGIHLDRLHIHEDTDISRMHSLDLIERGV
IPDDTLMREVDGKVRAIVCTHGHLDHIGAIAKLAHRYEAPIIATPYTIALIEKTIKGERK
FKVNNPLKTVNPGEKIQISPNLTLEFVRTTHSIPQTITAALHTPEGVVIYANDFKFDNHQ
MVSPPPDYRRFRELGKKGVKVAIMDTTNIKEVKESKTHSEKIARDLLKDVLKGPLEERKG
LIVTTFSSHIERIQAITKIAERSRRKVLLLGRSMERYCSIAESLGILNLPRNVSIYGNSK
SINKALARANENRTKYMLIVTGHQGEPDALLPRIANNKTNFEIKPGDNVIFSATTIPNPI
NLANRDLLNRRLKERGARIYNNVHVSGHAGPEDIRDFIRMLNPQHLIPSHGDLSHLAAFV
ELAEEEGYKLGNDVHILRNGQAQVFNR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
ttgacaatagaagtaatagcagtcggaggatatgaacaaataggaaaaaacatgactgct
gtaaaagtaaatgatgacgtagtaatatttgatatgggtatacatctagatagacttcac
atacacgaagacacggacatatcacgtatgcacagtctcgaccttatagaaagaggagta
ataccagacgacacattaatgagagaagtagatggaaaagtaagagcaatagtatgtaca
cacggtcaccttgaccacataggagcaatagcaaaactagcacacagatatgaagcacca
atcatcgcaacaccatacacaatagcactaatagaaaaaacaatcaaaggcgaaagaaaa
ttcaaagtaaacaatccactaaaaacagtaaaccctggagaaaaaatacaaatatcacca
aacctcacactagaatttgtaagaacaacacacagtataccacagacaatcacagcagca
ttacacacaccagaaggagtagtaatatacgcaaacgactttaaatttgacaaccaccaa
atggtatccccaccaccggactacagaagattcagagaactaggtaaaaaaggagtgaaa
gtagcaataatggatacaacaaacatcaaagaagtaaaagaaagcaaaacacactccgaa
aaaatagccagagacctcttaaaggatgtgcttaaaggaccattagaagaaagaaaagga
ctaatagtaacaacattctcaagtcacatagaaagaatacaagcaataacaaaaatagca
gaaagaagcagaagaaaagtactacttctcggacgttcaatggaaagatactgttcaata
gcagaatcactcggaatactaaacttaccaagaaatgtaagcatatacggaaactcaaaa
tcaatcaacaaagcactggcaagagcaaacgaaaacagaacaaaatacatgctcatagta
acaggacaccaaggagaaccagacgcactactaccaagaatagcaaacaacaaaacaaac
ttcgaaataaaaccgggagacaacgtaatattctctgcaacaacaatccctaacccaata
aacctagcaaacagggacttactaaacagaagactaaaagaaagaggagcaagaatatat
aataatgttcacgtatcaggtcacgcaggacccgaagatataagagactttataagaatg
ctaaacccacaacacttaatcccatcacacggggacttaagtcacttagcagcattcgta
gaattagcagaagaagaaggatataaactaggaaatgatgtacacatactaagaaatgga
caagcacaagtatttaataggtga
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