Methylomarinovum tepidoasis: MIN45_P0970
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Entry
MIN45_P0970 CDS
T09124
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
meiy
Methylomarinovum tepidoasis
Pathway
meiy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MIN45_P0970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meiy03400
]
MIN45_P0970
Enzymes [BR:
meiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MIN45_P0970
DNA repair and recombination proteins [BR:
meiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MIN45_P0970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
AAA_22
AAA_30
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BCX88601
LinkDB
All DBs
Position
complement(993650..997105)
Genome browser
AA seq
1151 aa
AA seq
DB search
MTAETRNLHSWQHPPLPTAPGHTLHWRGLHDTAPALALARAIAAHPSLFLVVTPDSHSAQ
RLEQALAFFLGERAPVLHFPDWETLPYDVFSPLPEIISERLRTLVRLPKTRHGVLVTPIA
TLMQRLAPQHHILARSLSLETGERLDLAALRERLEQAGYQCVPQVQQHGEFAVRGAILDL
FPMGSDTPLRIELFDDEIESIRTFDPETQRTIARTERFELFPAREFPTDSEAVKRFRRAF
RNAFPDLPAGNPLYQDVSSGFFPAGIEAYLPLFLETTATLFDYLPKDTTLVLAASPARAS
EFFTEVEQRYQLRRGDLDRPPLPPETLYLPPEDLRRRFQTYPRIDLFPESEAVDKVDFAT
APLPDVALEPQKKEPATRLQAFLAEHEGPVLFTAESPGRREALLDILKQSGLRPESVADW
ADFLARTPPLALTLAPLEQGLWSEDPALAVIPEARLYGERARQRRRDTARDIENLIADLS
ELTVGAPVVHRDHGVGRYLGLQRLEAGGVETEFLTLEYAGGDKLYVPVANLHLISRYSGA
DVENAPLHKLGGEQWKKARKKAQERVRDVAAELLEIHARRAARQGFAHQLDEAGYRAFAA
AFPFEETPDQRAAIEAVLADLKSPRPMDRVVCGDVGFGKTEVAMRAAFVAVQSGKQVAVL
VPTTLLAQQHYQNFRDRFADWPVRVEALSRFVTPTQQKQILRDVTDGKVDILIGTHKLLQ
KSVKYKNLGLVIIDEEQRFGVRQKEHFKKLRSEVDLLTLTATPIPRTLNMSLSGLRDISI
IASPPEGRHPIQTFVSEWVDGLVQEAILREIRRGGQVYFVHNKIESMARIAEEIGRLVPE
ARIRIAHGQMPERELERIMLDFYHQRFNVLLCTTIIESGIDVPSANTIIIHRADLFGLAQ
LHQLRGRVGRSHHRAYAYLLVPPKKLMTKDAVKRLEAIQASGDLGAGFLISSHDLEIRGA
GELLGDEQSGQIQEIGFNLYTEMLEKAVKALREGRELSFEEEADNVEVDLKLPALIPDDY
VPDVHTRLVLYKRIANAETGEALEALQVEMIDRFGLLPQAAKNLFTVAELKQRAERLGVT
KIDANAKGGRIQFTAEPSIDVEALLGLVQSRPQTYRLDGPQTLRFEENLEEPARRLAFVT
ELLAELAPKSA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgacggcagaaacccgcaacctccattcctggcaacacccgcccctgcctaccgcgccc
ggacacacgcttcattggcgcgggcttcacgacaccgcccctgcgctggcgctggcccga
gcgatcgctgcccatccgtccctgttcctggtggtcacccccgacagccacagcgcccag
cgcctggagcaggcgctggccttcttcctcggtgagcgggcgccggtgctgcatttcccg
gactgggaaaccctaccctacgacgtcttctccccgcttccggagatcatctccgaacgc
ctgcgcaccctggtgcgtctgcccaagacccggcacggggtgctcgtcacccccatcgcc
accctgatgcagcgcctcgccccccagcaccacatcctcgcccgcagtctctctctcgaa
accggcgagcggctcgatctggcggccctgcgggaacggctggagcaagccggctaccag
tgcgtcccccaggtgcagcagcacggggaattcgccgtccgcggcgccatcctcgacctg
ttcccaatgggcagcgacacgccgctgcggatcgaactgttcgacgacgaaatcgagtcc
atccgcaccttcgatccggaaacccagcgcaccatcgccagaaccgagcgcttcgagctg
ttcccggcgcgggaatttcccaccgacagcgaggcggtcaagcgcttccgccgcgccttc
cgcaacgcctttccggacctgcccgccggcaatccgctgtaccaggacgtcagcagcggc
ttcttccccgccggcatcgaggcttacctgcccctgtttctggaaaccacggcgaccctg
tttgactatctgccgaaggacaccaccctggtgctggccgcttcaccggccagagcgtcg
gaattcttcaccgaggtggaacagcgctatcagctgcgccgcggcgacctcgaccgcccg
cccctgcccccggagaccctctacctgccgccggaggacttgcggcgccgcttccaaacc
tacccccgcatcgacctgttccccgaatccgaggctgtggacaaggtggatttcgccacc
gccccgctgccggacgtggccctggaaccgcagaagaaggaaccggccacccgcctgcag
gcgtttctggccgaacacgagggtccggtgctgttcaccgccgaaagccccggccgccgc
gaagccctgctcgatatcctgaaacaatccggcctgcgcccggaaagcgtcgcggactgg
gctgacttcctcgcccgcaccccgcccctggccctgaccctcgcccccctggaacaaggg
ctgtggagcgaggacccggccctggcggtcattcccgaagccaggctctacggggagcgc
gcccgccagcgccgccgcgatacggcccgcgacatcgagaacctgatcgccgatctgagc
gagctgaccgtcggcgcgccggtggtccaccgcgaccacggcgtcggccgttacctgggc
ctgcagcggctggaggccggcggggtggaaaccgaatttctgaccctggaatacgccggc
ggcgacaagctctacgtgccggtggccaaccttcacctcatcagccgttacagcggcgcc
gacgtggaaaacgcccccctgcacaagctgggcggcgaacaatggaaaaaggcccgcaaa
aaggcccaggagcgggtccgcgacgtggccgccgaactgctggagatccacgcccggcgg
gccgcccgtcaggggttcgcccatcagctggacgaggccggttaccgcgccttcgccgcc
gcgttccccttcgaggaaaccccggaccagcgcgccgccatcgaggcggtgctcgccgat
ctcaagtccccccggcccatggaccgggtggtgtgcggcgacgtcggcttcggcaagacc
gaggtggccatgcgcgccgccttcgtcgcggtccagagcggcaaacaggtggcggtgctg
gtgcccaccacgctgctggcccagcagcattatcaaaacttccgcgaccgcttcgccgac
tggccggtgcgggtggaggcgctgtcgcgtttcgtcacccccacgcagcagaagcagatc
ctgcgtgacgtgaccgacggcaaggtggacatcctcatcggcacccacaaactgctgcag
aaaagcgtcaaatacaaaaatctggggctggtcatcatagacgaggagcagcgcttcggg
gtgcgccagaaggagcacttcaaaaagctgcgcagtgaagtggacctgctcactctcacc
gccacccccattccccgtaccctcaacatgtccctgtcgggtcttagggacatttccatc
atcgccagcccgccggaagggcggcatccgatccagaccttcgtcagcgaatgggtggac
ggcctggtgcaggaggcgatcctgcgcgagatccgccgcggcggccaggtctatttcgtc
cacaacaagatcgaatccatggcgcgcatcgccgaggagatcgggcgcctggtgcccgag
gcccgcatccgcatcgcccacggccaaatgcccgagcgcgagctggaacggatcatgctt
gacttctaccaccagcgcttcaacgtgctgctatgcaccaccatcatcgagagcggcatc
gacgtgccctcagccaacaccatcatcatccatcgcgccgacctgttcggcctggcccaa
ctgcaccagctgcgcgggcgggtgggccgctcccaccaccgcgcctacgcctacctgctg
gtgccgccgaagaagctgatgaccaaggacgccgtcaagcgcctggaggcgatccaggcc
tccggcgacctgggtgccggcttcctgatctcctcccacgacctggaaatccgcggcgcc
ggcgagctgctcggcgacgaacagagcggccagatccaggagatcggcttcaacctctac
accgaaatgctggaaaaggcggtcaaggccctcagggaaggccgagaactgagcttcgag
gaagaagccgacaacgtcgaggtggacctgaaactcccggccctgatccccgacgactac
gttcccgacgtccacacccgcctggtgctgtacaaacgcatcgccaacgctgaaaccggc
gaagcgctggaagcattgcaggtggaaatgatcgaccgattcggcctgctgccgcaggcg
gccaaaaacctgttcaccgtcgccgagctcaagcaacgggccgaacgcttaggagtcacc
aaaatcgacgccaacgccaaaggcggccgcatccaattcaccgcagagcccagcatcgac
gtggaagcgctgctgggactggtccagtcccggccacaaacttaccggctcgacggcccc
cagaccctgcgctttgaggaaaacctggaggaaccggcccggcgcctggccttcgtcacc
gaactcctggcagaactggcgccgaaaagcgcgtga
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