Methylophaga nitratireducenticrescens: Q7A_2008
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Entry
Q7A_2008 CDS
T02055
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
mej
Methylophaga nitratireducenticrescens
Pathway
mej03030
DNA replication
mej03430
Mismatch repair
mej03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q7A_2008 (holB)
03430 Mismatch repair
Q7A_2008 (holB)
03440 Homologous recombination
Q7A_2008 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mej03032
]
Q7A_2008 (holB)
03400 DNA repair and recombination proteins [BR:
mej03400
]
Q7A_2008 (holB)
Enzymes [BR:
mej01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Q7A_2008 (holB)
DNA replication proteins [BR:
mej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Q7A_2008 (holB)
DNA repair and recombination proteins [BR:
mej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Q7A_2008 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
Allexi_40kDa
QueC
Motif
Other DBs
NCBI-ProteinID:
AFI84825
UniProt:
I1XKA6
LinkDB
All DBs
Position
complement(2066570..2067532)
Genome browser
AA seq
320 aa
AA seq
DB search
MTALFPWQQTVWQHIVDRVEQQRMPHAVLLTGVAGLGKKQLAVKMAESLLCLAADKHFNA
CGVCHSCQIMQAGNHPDHLTIRSEEAGKSIKIDQIRALKEKQSLTPSVAKWKTVVIESAD
LMTNSAANSLLKLLEEPQNNTILILTTNAVHRLPVTIRSRCQQMHLSTPDYSMTLNWLDS
QGVATDADQLRKISSLTLDAPFAIVHALETNEWQSYQQIQQDFDQLIQQQANPVQLASQW
QQLDLVKVMHQLLSAVKSRLQQQYLEYAETSVTQHYWHIADCIVNTIKLISSSNNYNKTL
LIEDFMVSVMRITHTRSAIH
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgcttttcccatggcaacagacggtctggcaacatattgttgacagagttgag
caacaacgtatgccgcatgctgtcttgttgacgggtgtcgccggactggggaaaaagcag
ttagccgtcaaaatggctgagagtttattatgtcttgctgctgacaaacactttaacgcc
tgtggtgtgtgtcacagttgccagataatgcaggcagggaatcacccggatcacctgact
attcgttcggaggaggccggtaaatcgatcaaaatcgaccaaattcgtgcgctaaaagaa
aaacaatcccttactccaagcgttgccaaatggaaaaccgtagtgattgagtcagcagat
ttaatgaccaatagtgcagcaaacagtttattgaaactgcttgaagaaccacagaacaat
actattttaatcttaaccaccaatgcagtacatcggctgccagtgactattcgcagtcgt
tgtcagcagatgcatctgtcaacccctgattattcgatgacattaaattggctggattct
cagggcgttgctactgatgcagatcagttgcgaaaaatttcctcattaacgctggacgct
ccttttgctatcgtccatgcgctcgaaaccaatgagtggcagtcatatcaacagattcag
caggattttgatcaattgatacaacagcaggcaaatcccgtgcaacttgccagccaatgg
caacagctggatctggttaaagtaatgcatcaattgttatcggctgttaaatcccgactt
cagcaacagtatttggagtatgctgaaaccagtgtaacgcagcattactggcatatcgct
gattgcatagtgaatacaataaagctaatatcatcttcaaataactacaacaagacattg
ttaattgaagactttatggtttctgtaatgcgtattactcataccagatcagccattcat
taa
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