Methylophaga nitratireducenticrescens: Q7A_2920
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Entry
Q7A_2920 CDS
T02055
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
mej
Methylophaga nitratireducenticrescens
Pathway
mej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q7A_2920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mej03019
]
Q7A_2920
Enzymes [BR:
mej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q7A_2920
Messenger RNA biogenesis [BR:
mej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q7A_2920
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Amidohydro_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AFI85697
UniProt:
I1XMS8
LinkDB
All DBs
Position
complement(2725985..2727301)
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AA seq
438 aa
AA seq
DB search
MSAHLTDTAFSSLPLHPLLQKGLQQAGFEFCTPIQAQSLPLLLANHDVAGQAQTGTGKTI
AFLLATFQRLLANQDAQKSTSKQPRALILAPTRELAIQIVKDAELLNSHAGLRIVIAHGG
KDYQRQRDAIDDGCDVLIGTPGRLLDFHKQRVFNLNKIEAVVLDEADRMFDLGFIKDVRF
FLRRLPSPEKRLGMLFSATLSYKVTELAYEHMNNPEKVQVEPEKMMGDRIEEWVYYPSNE
EKIPLLLALIKRIQPVRSIVFVNTKQVAERVWGYLEGNGYKAALLSGDVPQKKRESLLKH
FQDGEFPYLVATDVAARGLHIPEVSHVFNFDLPQDAEDYVHRTGRTARAGASGIAISLAC
EEYAFSLPDIEHYIKHKLPVAQSTDEQLETPQPRIKAERNPAPRHKNKARGDKSHNNRPR
DGKRNNGHNKPVTSDANQ
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctcacctcaccgacacggcattttcatcgctgccactccatccgctcctgcag
aaaggcttgcagcaagccggttttgaattttgcacgccaattcaggctcagtctttacct
ttattgctggcaaaccacgatgtcgcgggtcaggcacaaacaggcaccggaaaaaccatc
gcctttttattagccacatttcaacgcttattagcgaatcaggatgcgcaaaaatcgact
tcaaagcaacctcgcgcgttaatattggcacccactcgggaattggcaattcagattgta
aaagatgctgaattactaaacagtcatgccggattgcgcattgtgatcgcgcatggcggt
aaagattatcaacgtcaacgtgatgcaatcgatgacggttgtgatgttttgattggtaca
ccgggacgtctgctggatttccataaacaacgggtgtttaaccttaataaaattgaagca
gtggtgctggatgaagcagaccgaatgtttgatctgggctttattaaagacgtgagattt
ttcctgcgccgcttacccagtcctgaaaagcgtttaggcatgctcttttctgccacactt
agttataaagtgactgagctggcttacgaacatatgaataatccggagaaagtgcaggtc
gagccggaaaaaatgatgggtgatcggattgaagaatgggtttattacccttcaaatgaa
gaaaaaataccgttactgctggcattaataaagcgaattcaaccagtccgtagcattgtt
tttgtcaacacaaaacaagtcgccgagcgggtatggggctatctggaaggtaacggctac
aaagccgctttattatctggcgatgtaccgcagaaaaaacgtgaaagcctgttaaaacat
ttccaggatggtgagtttccgtatctggtggcaaccgatgtggccgctcgtgggttacat
attcctgaagtcagtcatgtgttcaactttgatttaccgcaggatgctgaagactatgtg
catcgtacggggagaactgcgcgggcgggtgccagtggtatcgccattagtctggcctgt
gaggaatatgcgttttcgttgccagatatagagcactatatcaaacataaattgccagta
gcgcaaagcactgatgagcagttggaaacacctcagcccagaatcaaagctgaacgaaat
ccggccccacgccataaaaataaagctcgtggagataaaagccataacaatcgtccacgc
gacggcaagcgtaataatggccacaataaaccggtaacttcggatgcaaatcaatag
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