Methanosarcina sp. Kolksee: MSKOL_0277
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Entry
MSKOL_0277 CDS
T03821
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mek
Methanosarcina sp. Kolksee
Brite
KEGG Orthology (KO) [BR:
mek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mek03016
]
MSKOL_0277
Enzymes [BR:
mek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MSKOL_0277
Transfer RNA biogenesis [BR:
mek03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MSKOL_0277
Prokaryotic type
tRNA splicing ligases
MSKOL_0277
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
AJM1_C
Motif
Other DBs
NCBI-ProteinID:
AKB46054
LinkDB
All DBs
Position
complement(322963..324465)
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AA seq
500 aa
AA seq
DB search
MVESEDTAIEELSTENIQKDVKGMVRKLSENEWEIPVGHIPNMRVPGRLFVSQSLLEGIE
PETIDQIANVATLPGIQKYSMAMPDAHLGYGFAIGGVAAFDVEEGIISPGGVGFDINCGV
RLIRTNLQKEEVVPNIKRLTDELFSNVPAGVGSKSRIRASDKELDSAFLEGASWAVEAGY
GVEADVKHCEANGYMEGADPAQVSTKARKRGKPQLGTLGSGNHFLEVQYVDKIYDQEIAS
TFGLQEGQVTVMIHCGSRGAGHQICTDHLKELSQAVKNYKIEIPDKQLACAPAQSMEAQN
YFKAMLCAANYAWANRQIITHWTRESFERIFERDADDLGMDLLYDVAHNVAKLEKHTVDG
KKKEVYVHRKGATRAFPPGHPEVPAVYRDVGQPVLIPGSMGTPSYILCGSEEAMNVSFGS
ACHGAGRVMSRAHAKKEFRGQSIKENLEARGITVRATHPSVIAEEAPDVYKSSSEVVNVV
HELGIARKVARVLPLGVTKG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggtagagagtgaagatacagctattgaggaattaagcacggaaaatatacagaaggat
gtaaagggtatggtcaggaagctttccgaaaacgaatgggaaattcctgttggccacatc
cctaacatgcgggttccaggccgcctgtttgtatcccagagtttgcttgaaggcattgaa
cccgagactatcgaccagattgcaaatgtagcaaccctacctggtattcagaagtactcc
atggcaatgcctgatgctcatcttggctatggctttgctatagggggagttgccgctttt
gatgtagaagaaggtattatcagcccgggcggggtgggctttgatatcaactgcggagta
aggttaatccgtaccaaccttcagaaagaagaggtagttccaaacataaagaggttaact
gacgagctttttagtaatgtgcccgcaggcgttggttccaaaagccggatcagggcgtcg
gataaagaactggacagtgcttttttagaaggggcaagctgggctgtagaagccgggtat
ggcgtagaagctgatgtcaagcactgtgaagctaatgggtatatggaaggagctgaccct
gcccaggtaagcacaaaagccagaaaaagaggaaaacctcagttaggaactcttggaagc
ggcaaccacttccttgaggtgcagtatgttgataagatctatgatcaggaaatagcctca
acctttgggcttcaagaaggccaggttacggtaatgatccactgtgggtcaagaggtgca
gggcaccagatctgtactgaccacttaaaggaactctctcaggccgtaaagaactataaa
atagaaattccggacaaacaacttgcctgtgcccctgcccagtcaatggaagcccagaac
tattttaaagccatgctctgtgctgcaaattatgcatgggcaaatcgtcagataattact
cactggacaagggaatcgtttgaaagaatatttgagagagatgctgacgacctgggcatg
gatttgctttatgacgttgctcataacgtggcaaaacttgaaaaacataccgtggacggc
aagaaaaaagaggtgtatgtacacaggaaaggagcaacaagagcctttcctccagggcat
cccgaagtcccggccgtatacagagatgtaggtcaaccagtgctgattcctggaagcatg
ggaactccttcttatatactatgcggttcagaagaggctatgaatgtttctttcggtagt
gcctgtcatggggctggcagggtcatgagcagagcacatgcaaagaaagaattccgcgga
cagagcataaaagaaaaccttgaagctcggggcattacagtaagagccacccatccttca
gtcattgcagaggaagctccggatgtatacaagtccagcagcgaagtggtaaatgtcgtg
cacgaactcggaattgcccgtaaggtcgcaagagtccttcctttgggggttacaaaaggt
taa
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