Methanosarcina sp. Kolksee: MSKOL_0501
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Entry
MSKOL_0501 CDS
T03821
Name
(GenBank) Transcription initiation factor B
KO
K03124
transcription initiation factor TFIIB
Organism
mek
Methanosarcina sp. Kolksee
Pathway
mek03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mek00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSKOL_0501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mek03021
]
MSKOL_0501
Transcription machinery [BR:
mek03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
MSKOL_0501
Prokaryotic type
Archaeal type
TFB
MSKOL_0501
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cas12f1-like_TNB
Sigma70_r4
Zn_ribbon_SprT
Lar_restr_allev
Zn_ribbon_LysW
RPA_interact_C
Zn_ribbon_IS1595
Trm112p
DUF7577
HTH_AsnC-type
BRF2-like_C_cyclin_rpt
HTH_Tnp_ISL3
Zn_ribbon_PaaD
A2L_zn_ribbon
zf-ChsH2
Ribosomal_S27e
Motif
Other DBs
NCBI-ProteinID:
AKB46278
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All DBs
Position
complement(604440..605453)
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AA seq
337 aa
AA seq
DB search
MVEVERVRYSDTLEREKIRAMIKARKEKQKEQSFEKEKAVCPECGSRNLVHDYERAELVC
GDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKS
ISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKA
VDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSRVSRKEIGRTYRFISRELALK
LMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILC
GERRTQREVADVAGVTEVTIRNRYKELAEELDIEIIL
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggtagaagtcgaaagagttcgctattcggacactcttgaaagagaaaaaatacgtgcc
atgatcaaagctcgcaaagagaagcaaaaggagcaaagttttgagaaagaaaaggccgtg
tgtccagaatgcggcagcagaaacctcgtccacgactatgagcgagccgaactcgtgtgt
ggggactgcggacttgtcattgatgccgattttgtggatgaaggcccagaatggcgagct
ttcgatcatgatcaacgtatgaagcgttcccgtgtgggtgcgcccatgacatacacaatc
cacgacaaagggctctccacaatgattgactggaggaaccgcgactcctatggaaagtca
atctcttccaaaaatcgtgctcagctctatcgtttaagaaaatggcagcgtagaatccgt
gtaagtaacgcaactgaaagaaaccttgcatttgcactatctgaactggacagaatggct
tctgctctcggtcttccgagaactgtgcgggaaaccgcagctgtcgtctacagaaaagct
gtggacaagaaccttatccgtggaaggagcattgaaggtgttgctgcagccgctctttat
gctgcttgccgccagtgcagtgtcccaaggactcttgatgaaatcgaagaggtgtccagg
gtcagccggaaagaaatcggaagaacctaccgctttatttccagagaactcgcactgaag
ctcatgcccacatctcctatcgactacgtcccaaggttctgttcaggtcttaaccttaaa
ggagaagtccagtccaagagcgttgagatcctgaggcaggcttccgaaaaggaactcaca
agcgggaggggtcccacaggagttgctgccgctgcaatttatattgcgtccattctctgt
ggtgagcggagaactcagcgggaagttgcggatgtagccggggttacagaagttactatc
cgaaacagatacaaagagcttgcagaagaactggatatagagattattctctaa
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