Methanosarcina sp. Kolksee: MSKOL_0897
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Entry
MSKOL_0897 CDS
T03821
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mek
Methanosarcina sp. Kolksee
Pathway
mek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSKOL_0897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mek03019
]
MSKOL_0897
03009 Ribosome biogenesis [BR:
mek03009
]
MSKOL_0897
Enzymes [BR:
mek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSKOL_0897
Messenger RNA biogenesis [BR:
mek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSKOL_0897
Ribosome biogenesis [BR:
mek03009
]
Prokaryotic type
rRNA helicases
MSKOL_0897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKB46674
UniProt:
A0A0E3QBP8
LinkDB
All DBs
Position
complement(1121782..1123533)
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AA seq
583 aa
AA seq
DB search
MEKLAKFKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAF
GAPIIEKIPEKSGKVQAIVLTPTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQLRV
LKSGVDIVVGTPGRVIDHLERKSLNLEDIAYFVLDEADEMLNMGFIDDIKEILKATGPDK
RMLFFSATMPKPILGIIKKYMKTYEHVAIEKEDLDVNLTEQIYFEVKESDKFEALCRIID
IEDEFYGLVFCRTKTDTAQLAQKLGDRGYAADALHGDLSQNEREKILNRFRKQKINILAA
TDVAARGIDILDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIK
KTSKSEMKKGRIPEIKDVIKAKRARVKAELEETIKTEEYGDCLEMSEKLLEEYPAEKILA
ALLKYSFKEMFDESMYTEISGSSYVDRKGKTRLFIAMGKADGMTPEKLCEFMQEETGEND
LKIRDAEIFPHFSFVTVPFAQASALLEIFKDKKRGRKPFIELAQKSKGRSSKSAGESHGD
TRNGSRSYSRNDSWNGSRSDSRNSNSKGYTKDTRTAKKKYSSY
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcattagggctttcagacagtatgttaaaagccctt
aaaaagaaagggtttgaagaaccgaccccaattcaggaaaaagttatcccgctttttttg
aaaggagaatgtgatatcatagggcaggctcagaccggaaccggaaaaacaacggctttc
ggagcccccattatagaaaaaattccggagaaatcaggaaaggtgcaggcgatagtcctg
accccgactcgagaactggcaatccaggtctcagaagaactcaattcccttaaaggggac
aaaaagctgcatatcgtcccgatttatgggggacagtccatgacccagcaactcagagtg
ctgaaaagcggagttgatattgtcgtgggaaccccaggaagagtaatcgatcaccttgag
cggaagagcttgaaccttgaggacatcgcgtacttcgtactggacgaagctgatgaaatg
ctcaatatgggcttcattgacgatattaaggaaatcttaaaggcaactgggcctgataag
cgaatgcttttcttctcagctacaatgccaaagccaatccttggaatcatcaagaaatac
atgaagacctatgagcatgttgccattgagaaagaagaccttgatgtaaacctgaccgag
cagatttatttcgaagtcaaggaaagcgacaaatttgaagccctgtgcaggattatcgat
attgaagacgagttctacgggcttgtgttctgcagaacaaaaaccgataccgcccaactt
gctcagaagcttggagaccgaggatatgcagccgatgccctgcacggcgacctttcccag
aatgaaagggaaaagatactgaacaggttcagaaagcaaaaaataaacatcctcgcggca
accgacgttgcagctcgaggtatcgatattctggatctgacccatgtaatcaattattcc
cttccgcaggaccctgaatcctacgtacacaggatagggaggaccggtagggcaggaaag
cagggaactgcgatcactttcgttacatccacggaatacaggcggctcacctacataaaa
aagacttcaaagtccgaaatgaaaaaaggccgaattcccgagataaaagatgtaataaaa
gccaaaagggcaagagtaaaagccgaactcgaagagactataaaaaccgaagagtacggc
gactgccttgagatgagtgagaagcttcttgaagaatacccggctgaaaagatcctggct
gccctcctgaagtactctttcaaagagatgttcgatgaaagcatgtacacagagatctcc
ggaagttcatatgtcgaccggaaaggtaaaaccaggcttttcatcgcaatggggaaagct
gatggcatgacccctgagaagctatgtgagtttatgcaggaagaaaccggagaaaacgat
cttaaaataagagatgcggaaattttcccacacttctccttcgtaactgtaccttttgct
caggcttcagccctgcttgaaatcttcaaagacaaaaagagaggtcgaaaaccctttata
gagcttgcccagaaatcaaagggaagaagctcaaaaagtgctggtgaatctcacggtgac
actcgcaacggctctcggagttattctcgaaatgattcctggaatggttctcgcagtgac
tctcgcaattcgaacagcaaaggttatacaaaagatacacgaactgcgaagaaaaaatat
tcttcgtattaa
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