Methanosarcina sp. Kolksee: MSKOL_1003
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Entry
MSKOL_1003 CDS
T03821
Name
(GenBank) Cell division protein FtsH
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mek
Methanosarcina sp. Kolksee
Pathway
mek04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
MSKOL_1003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mek03019
]
MSKOL_1003
03009 Ribosome biogenesis [BR:
mek03009
]
MSKOL_1003
04131 Membrane trafficking [BR:
mek04131
]
MSKOL_1003
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mek04147
]
MSKOL_1003
Messenger RNA biogenesis [BR:
mek03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
MSKOL_1003
Ribosome biogenesis [BR:
mek03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
MSKOL_1003
Membrane trafficking [BR:
mek04131
]
SNARE
SNARE associated proteins
Others
MSKOL_1003
Autophagy
Aggrephagy
Other aggrephagy associated proteins
MSKOL_1003
Exosome [BR:
mek04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
MSKOL_1003
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
RuvB_N
CDC48_2
AAA_16
AAA_5
AAA_14
TIP49
AAA_22
AAA_2
AAA_33
AAA_28
IstB_IS21
nSTAND3
RNA_helicase
AAA_7
AAA_25
Mg_chelatase
AAA_18
Sigma54_activat
Parvo_NS1
nSTAND_NTPase5
NPHP3_N
AAA_24
DUF815
AAA_17
DUF5906
ATPase
Zeta_toxin
NB-ARC
TsaE
SLFN-g3_helicase
bpMoxR
PhoH
Vps4_C
AAA_lid_PRS2_C
Motif
Other DBs
NCBI-ProteinID:
AKB46780
LinkDB
All DBs
Position
complement(1262801..1265128)
Genome browser
AA seq
775 aa
AA seq
DB search
MEEIQLKVEKAYPIDLGRGIIRLDPTTLLKLQLSPGDIVEIRGKKKTTAKVWRADRQDWD
QGLVRIDNFIRQNAGVSIGEKVTIKKVEAPEAKKLVLALPESMTQGGPELQFGEHANEII
KRHILKRPVFRGDIIPIINSMSQPMTESLTTSQVIPLVAVETEPSNTIVLVTEETLIELR
KKPVQGYEKATRGVTTYEDIGGLGAEIMRVREIIEMPMKHPELFAHLNIEPPKGVILYGP
PGTGKTLIAKAVANESGASFHYIAGPEIVGKFYGESEERLRKIFEEATQDAPSVIFIDEI
DSIAPKRENVTGEVERRVVAQLLTLLDGMVERGQVVVIGATNRVDAIDPALRRPGRFDRE
IHIGVPDTKDRYEILQIHTRGMPIERDEEPEELEKVETEADEAALERERKEKADKYLMSL
AERTQGFVGADLLALVQEAAMRCLRENLPDLDLEKEAIPPERLEKIVVTKKNFEDALMEA
EPSALREIYVEMPNVSWNDVGGLDEAKQSITEAVEWPIKNPEKFARMGIKAPRGILLYGP
PGTGKTLIAKAVAKESNANFISVKGPEIFSKWLGESEKAIRETFRKARQVAPCVIFFDEI
DSIASMPGMESTDSHTSERVLNQLLTEMDGLESLRDVVVIAATNRPNLLDPAILRPGRFD
RLVYIGSPDRKGRLKIFRIHTKGTPLYENVNLEALADETEGYVGADIESVSREAVMIALR
ENFDAEYVEMRHFKEALKKVKPTITENIAQFYEKIEAQFKGGQRLTETAGYVGYR
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaatacagttgaaggttgaaaaagcatatcctatcgaccttggaagaggaatt
atccgacttgaccctacaactttgctgaagcttcagctctcgccaggcgacatcgtggaa
ataagaggtaaaaaaaagaccacggcaaaggtatggagagctgacaggcaggactgggac
cagggactcgtaagaattgataacttcatccggcaaaatgcaggtgtttccataggagag
aaggtaactatcaaaaaggttgaagccccggaagcaaaaaaacttgttctggcacttccg
gaaagcatgacacaggggggacctgaacttcagttcggggaacatgcaaatgaaatcata
aaacggcatatcctcaaaaggccggtttttagaggagatataattcctataataaactcg
atgtctcagccaatgacagaatcccttactacaagccaggtaatccctctggttgctgtt
gagactgaaccttcaaacacaattgtccttgttacggaagaaacacttatcgaacttcgt
aaaaaaccggtacaggggtacgaaaaagcaacccggggcgtgactacttatgaagatata
ggaggcctcggggctgaaatcatgcgtgtccgggaaattatagagatgcccatgaagcat
cctgaacttttcgctcaccttaatattgagcctccgaaaggagttattctatatggcccg
cccggaaccggaaaaaccctgattgcgaaagccgtagccaatgaatctggagcaagtttc
cattatattgccggccctgaaattgtagggaaattctatggagaaagtgaagaaaggcta
aggaagatcttcgaggaagcaactcaggatgctccatcagtcatttttattgacgaaatt
gactccattgcaccaaaaagagagaatgtaacaggggaagttgaaaggcgtgtggtcgcc
cagctcctgactctgcttgacgggatggtagagagaggtcaggtcgtggttataggagct
acaaaccgtgtggatgcgattgacccggcacttaggagaccaggccgctttgacagagaa
atccatatcggtgtgcctgatactaaagacaggtatgaaatccttcaaatccataccagg
ggtatgcccatagaaagggatgaggaaccagaggagctcgaaaaagtcgaaaccgaagct
gatgaggctgccctggagagggaaaggaaagaaaaggcagataaatatctgatgtctctg
gctgaaagaacccaggggtttgtaggcgcagatctgctggctcttgtacaggaagctgcc
atgcggtgcctcagggaaaatctgcctgaccttgatcttgaaaaggaagcaattccgcct
gagagactggaaaaaatcgttgtaaccaagaaaaattttgaagatgccctgatggaggcc
gaaccctcggctcttagagaaatttatgtggaaatgcccaacgttagctggaatgatgtt
ggagggctcgatgaagcaaagcagtccattactgaggctgtggaatggcccatcaaaaat
ccggaaaagttcgctcgtatgggcataaaagctccaagaggaatcctgctttacggcccg
ccaggaaccggaaagaccctgatagcaaaggctgttgccaaagagtcaaatgcgaacttc
ataagcgtcaaagggcctgagattttctcaaagtggcttggagaatcggaaaaagctata
agggagaccttcaggaaagcccggcaggtcgctccctgtgtgattttctttgatgaaatc
gattcgattgcttctatgccaggaatggaatccacggacagccacacttcagagagggtg
cttaaccagctcctgaccgagatggacgggcttgagtcccttagagatgtggtagtgatt
gccgcaaccaaccgccctaaccttctggaccctgcaatcctgcgtccaggacgctttgac
aggctggtttacatcggttctcctgaccggaaaggcaggctcaagatattcagaatccat
acaaagggtacacccctttatgaaaatgtgaaccttgaagcccttgccgatgaaactgag
ggttacgtaggcgccgatattgaatcagttagcagggaagccgtaatgattgccctgaga
gagaacttcgatgcagaatatgtagaaatgagacacttcaaagaagctctgaagaaggta
aaacccacaattacggagaatattgctcagttctacgaaaagatcgaggcgcagttcaag
ggaggccagagactcacagaaacagctggctatgtcggttacaggtaa
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