Methanosarcina sp. Kolksee: MSKOL_1022
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Entry
MSKOL_1022 CDS
T03821
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mek
Methanosarcina sp. Kolksee
Pathway
mek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSKOL_1022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mek03019
]
MSKOL_1022
Messenger RNA biogenesis [BR:
mek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSKOL_1022
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_3
DRMBL
Motif
Other DBs
NCBI-ProteinID:
AKB46799
LinkDB
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Position
complement(1287171..1288595)
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AA seq
474 aa
AA seq
DB search
MVQISILGGKKEIGGNKILVEHKGTRILLDFGMSFGQNSRYFSEFLQPRRCSALTDFFEM
GLLPDIKGVYRTDYLEHMGRIVEEKDLDAVFLTHAHADHAQYIHFLRFDIPIFCTAETKI
ILQCLEETSRNTLSDYITACESFKFYRNSKKELSRVDRKKKEYIHERDFQVMEQEKKVKV
GSLEVEMVPVDHSLPGACGFIIYTDEGNLVYTGDIRFHGSNQELSRKFVQKAKSVNPKLL
ICEGTRIGSSEVDSEEGVRGEITKLISESSGLVFVEHPIRDIDRMKSIFESARENHRDFV
VPLKAAYLIEALGNLCPFCIEDVKILVPRKSWGLIYKEGYEQSLINNDYESWERDYIYRS
NSITCKELKQNPLNYVVSMSLWEINHLIDIQPQNAIWIKSSCEPFCEEMELDEERKQNWL
DRFEIVKYSAHASGHASGQEIIEMINEIKPENVIPVHTEKPDLFKQAEAKILIY
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
ttggtccagataagcatacttggaggaaaaaaagagatcggtggaaataaaattcttgta
gaacataaaggaacaagaattttattagattttggaatgagttttggtcaaaactctaga
tacttttctgaatttttacaacctcgtagatgctccgctttaactgacttttttgaaatg
ggtcttcttcctgatataaagggagtttatagaactgattatcttgaacatatgggaaga
atagtagaagaaaaagatttagatgccgtttttcttacccatgcccatgctgatcatgct
caatatatacattttttgagatttgatattccaattttctgcacggcagagacgaagata
atattgcaatgcttggaagaaactagtagaaacacactgtctgactatataacagcatgt
gagtccttcaaattttatcgaaattcaaaaaaggaattatctagagttgacagaaaaaaa
aaggagtatatacacgaaagagatttccaagtaatggaacaagaaaaaaaagttaaagtc
ggcagtttagaagtagaaatggttcctgttgaccattcactccctggagcttgtggtttc
ataatctatacagatgaaggaaatttggtttatacaggtgatatccgctttcatggctcc
aatcaggaattgagcagaaaatttgtgcaaaaagcgaaatctgtaaatccaaaattatta
atctgcgaagggacaagaataggtagcagtgaagtagacagtgaggaaggggtaagagga
gaaataacaaaactaatttctgaatctagtgggcttgtttttgttgagcacccaatcaga
gatattgaccgaatgaaaagcatctttgaatcagcaagagaaaatcacagagattttgta
gtacccctaaaagctgcttacttaattgaagcacttgggaatttatgccccttttgcatt
gaagatgtaaaaattttagtgccaaggaaaagttggggattaatttataaagaaggttat
gaacaaagtttaattaacaacgattatgaatcatgggaacgagattacatttatcgatca
aattcaataacttgtaaagaactaaagcagaatcccctaaattatgtggtttccatgagc
ttatgggaaataaaccaccttatagatattcaaccacaaaatgctatttggataaaatcc
tcgtgtgaacctttttgtgaggaaatggagctggatgaggaaagaaagcaaaattggctg
gatcgatttgaaatagtaaaatattcggcacatgcttcaggtcacgcatctggtcaagaa
attatagaaatgataaatgaaataaaacctgaaaatgttattccagttcacacagaaaag
cctgatctctttaagcaagctgaagcaaagatacttatttactga
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