Methanosarcina sp. Kolksee: MSKOL_1112
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Entry
MSKOL_1112 CDS
T03821
Name
(GenBank) putative exosome complex exonuclease 2
KO
K12589
exosome complex component RRP42
Organism
mek
Methanosarcina sp. Kolksee
Pathway
mek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSKOL_1112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mek03019
]
MSKOL_1112
Messenger RNA biogenesis [BR:
mek03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSKOL_1112
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSKOL_1112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
HopA1
Motif
Other DBs
NCBI-ProteinID:
AKB46889
UniProt:
A0A0E3QAE9
LinkDB
All DBs
Position
complement(1398883..1399674)
Genome browser
AA seq
263 aa
AA seq
DB search
MSEIIATLKKDYIYNLMIKGKRQDGRGFKDFRDIKLETNVISKAEGSAKVTLGDTQILVG
VKLQPGTPFQDSHDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDI
KKLCISIGESVWIIYIDVHVLNDDGNVIDAACLAAIAALMTTIVPNEQQGIGADVPLAMK
EVPVGVTLAKIGSKLMVDPSLDEEAVCETKLTVVSSLDGSIAGMQKMGPVPFTEAEVLEA
IDMACEKAAEIRELYLEELVKKE
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaattattgctacgcttaagaaggattatatttacaaccttatgattaaggga
aagcgccaggatgggcgcggatttaaagatttcagagatatcaagctcgaaacgaatgtt
atctcgaaagccgagggctcggcaaaggtaaccctgggagatacccagattcttgtagga
gttaagcttcagccaggaactccgtttcaggactctcacgatgaaggcgtaattattact
aatctggaactcaaccctattgcttccccagagtttgagccaggcccacccagagaagaa
gcaattgaaatggcaagggttgtagacaggggaatcagggaatcaggcgcaattgatata
aagaagctttgcataagcattggagaatccgtctggatcatctatatagatgtccatgta
ctcaatgatgacggaaatgtcattgatgcggcctgtctcgctgctattgcagcccttatg
actacaattgtccctaacgagcagcagggaatcggtgcggatgtaccccttgcaatgaaa
gaggtgcctgtgggcgtgactcttgccaagataggctcaaagcttatggtggatccgtca
ctggatgaggaagctgtttgtgagacgaaattaacggtggtctcaagtttggatgggtct
atcgcaggcatgcaaaaaatgggccctgttccgttcacagaggctgaggtgctggaagca
atagatatggcatgcgaaaaggcagccgaaatcagggaactttatctggaagaactggta
aagaaggaatga
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