Methanosarcina sp. Kolksee: MSKOL_2014
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Entry
MSKOL_2014 CDS
T03821
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
mek
Methanosarcina sp. Kolksee
Brite
KEGG Orthology (KO) [BR:
mek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mek03032
]
MSKOL_2014
03400 DNA repair and recombination proteins [BR:
mek03400
]
MSKOL_2014
Enzymes [BR:
mek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
MSKOL_2014
DNA replication proteins [BR:
mek03032
]
Prokaryotic type
DNA Topoisomerases
MSKOL_2014
DNA repair and recombination proteins [BR:
mek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MSKOL_2014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
AKB47791
LinkDB
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Position
complement(2602317..2604218)
Genome browser
AA seq
633 aa
AA seq
DB search
MSDKQVYDASHIQVLEGLEAVRKRPSMYIGSTDGRGLHHLVYEVVDNSIDEALAGFCTRV
NVTINPDGSVTVLDNGRGIPIDLHPFHKKSALEVVMTVLHAGGKFDKNTYKVSGGLHGVG
VSVVNALSEWLEVEVSREGKKYFQRYSRGKPEADVQEIGTSETTGTKTTFKPDEKIFETL
DFDYEILSNRLRELAFLNRGLIISLKDLRTPEGQAEIFTYEGGIVEFVKYLNNKKQSLHD
PIYFERQRDDMVVEIAMQYTSSYTENVYSFANNINTHEGGTHIIGFKTALTRVANDYIKA
NKLSKEDIKLTGDDVREGLTAIISVKLMEPQFEGQTKTKLGNSDVKGIVDSLVTDGLAEY
FEENPKVANVILEKALLAQKAREAAKKARELTRRKNALEVSTLPGKLADCSEKNPAACEI
YIVEGNSAGGSAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNEEIISLITAIGTGVSE
DFNLESARYHKVIIMTDADVDGEHIRTLLLTLFFRYMRPLIDEGYVYIAQPPLYRIKKGK
AEYYIHSDRELEAKKKELGEKGLGIQRYKGLGEMNPEQLWETTMKPESRTLLQVTLEDAI
RADEIFRILMGDEVEPRRNFIEAHAKEVVNLDI
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaacaggtttacgatgcttcgcacatccaggtgctggaaggcctggaggct
gtccggaagcgtcccagcatgtatatagggagcacggatggtcgcgggctccaccaccta
gtctatgaagtagtagacaatagtattgatgaagctcttgcaggcttctgtaccagggta
aatgttacaatcaacccggacgggagtgtgacagtcctggataatggaagaggtatacct
atcgacctccatccatttcacaaaaaatcagctcttgaagttgtaatgactgttctgcat
gcaggagggaagttcgacaagaacacctataaggtttcagggggactgcatggagtaggg
gtttctgttgtaaatgcactttcggaatggctggaagttgaagtgtcaagagaaggcaag
aagtatttccagcgctattcccgtggaaagcctgaggctgacgttcaggaaatcggaact
tcagaaactacaggcacaaaaactacttttaaacccgatgagaaaatttttgagacactt
gatttcgattacgagatcctttcaaaccgtttaagagaactggctttcctgaaccggggc
cttattatcagcctcaaggatttaagaaccccagaagggcaggctgagattttcacctac
gaagggggaatagtggagttcgtgaagtatctgaacaataagaaacagtctcttcacgac
ccgatttattttgagcggcaaagggacgacatggtagtagaaattgcaatgcagtacaca
agcagctatacagaaaacgtgtactcctttgcaaacaacatcaatacccacgaaggcgga
actcacataatcggtttcaagaccgcactgacaagggttgcaaatgactatattaaagct
aacaagctttccaaagaagacataaagcttacaggcgatgatgtaagggaaggactgact
gcaatcatcagtgtcaaactaatggaaccccagtttgaggggcagaccaagacaaagctt
ggaaatagtgatgtcaaaggaattgtggactcccttgtaactgacgggcttgcggaatac
ttcgaggaaaatcccaaggttgcaaatgttattcttgaaaaagcccttcttgcccagaaa
gccagagaagctgcaaaaaaagcaagagaactgacccggagaaaaaatgctctcgaagta
agcactcttccaggaaaacttgcggactgctcggaaaagaatcctgcagcctgtgagatt
tacattgtggaaggtaattcggcaggcggttcggcaaaacagggtagagacaggagtttt
caggctattttacctctcagaggcaagatcctgaacgtagaaaaatccagacttgcaaag
atcctgaaaaacgaggagatcatttccctaatcactgccattggaacaggagtcagcgag
gacttcaacctggaaagtgcccgctaccataaggtcattatcatgactgatgctgatgtg
gatggagaacacatcaggactcttcttctcacactgttcttccgctatatgaggcctctt
attgacgagggatacgtatacattgcccagcctcctctctaccgcataaagaaaggcaaa
gctgagtactacatacactctgacagggaactggaagcaaagaagaaagaactcggggaa
aaaggacttggaatccagcgttataaagggcttggagaaatgaaccctgaacagctctgg
gaaaccaccatgaaacctgagagccggactcttttacaggtgaccctggaagatgcgatt
cgggctgatgagatattcagaatcctcatgggagatgaggttgagccacgccggaacttc
atagaagcgcatgcaaaagaggtcgtaaacctggacatctga
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