Methanosarcina sp. Kolksee: MSKOL_2061
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Entry
MSKOL_2061 CDS
T03821
Name
(GenBank) Putative ski2-type helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
mek
Methanosarcina sp. Kolksee
Brite
KEGG Orthology (KO) [BR:
mek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mek03019
]
MSKOL_2061
Messenger RNA biogenesis [BR:
mek03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
MSKOL_2061
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
MGP3_C
DEXQc_Suv3
Motif
Other DBs
NCBI-ProteinID:
AKB47838
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All DBs
Position
complement(2669494..2671971)
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AA seq
825 aa
AA seq
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MLWVLGYAEKSKIRVMAIKDRMKQPLYMAELVIKDSYKGPRPLKIRRLTDKKKEEFIPPQ
QFIELLRSANRIMFAEGGDPSNEAAFLEMLKGFQLDADKVKICKHCWINKRFNFVNSKSI
KYNNELICLECAKEELLRAVRSAGVQYGEKSIDFLEQVLSKTRDLDRTIRMLSPERLDPE
FTRYDTIRTNPASATVRVKSLPLQKKFKEMLLEKSETLLPVQTLSIEAGLLEGKNQFVVS
ATATGKTLIGEMAGIQNLFNKKGKMLYLVPLVALANQKYEQFKERYSKLGFTTSIKIGAI
LIKTSQRVKMQTSPGADIIVGTYEGIDHMLRSGNADFLGKIGTVVVDEVHTLEDQERGHR
LDGLIGRLRYVAPEAQFIYLSATVANPAGYAKKLGAQLVRYEHRPVPIDRHLLFCQENEK
AKLISQLAKEEYSVFSSKKHRGQTIVFTNSRRNCHKLAGALSIQAAPYHAGLSQYERKKV
ETRFAKGEIPVIVTTAALAAGVDFPASQVIFESLAMGIDWISVQDFLQMSGRAGRPDYHD
RGVVVLMPVPGKSYSGSQSDTEEEVAIKLLQGEMISAGVHYGEAEQFEEVLASVAVTSSV
QDLRMIHNQMFGDYDLDKLVLRLQSYRFVEKKGNRITLTRFGKITAAHFLPVSKAFLIRD
AVLGDNEPLKIATNLEFFDAAYFKYANQIGSSLHVNMPSRIFQGATLDIIFDGESLSQLD
AKLQELLLNFASDFLTCKCKDSPYCGCAEQKFSEKIIKLRTEALEPAQIVNKLENKYGIS
AYQGDVFGYLDNAVRNLDAVELIAKVHSKKGVAEEAKKLKKKVQG
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgctctgggtcctaggttatgctgaaaaatcgaagataagagtcatggctataaaggac
cggatgaaacaaccgctttatatggccgagctcgttataaaagatagttacaaagggcct
cgccctctcaaaatcaggcgcctcaccgacaagaaaaaagaagaattcattcctcctcag
cagtttatagagctcctgcgcagtgcaaaccgaataatgttcgcagaaggaggagatcct
tcaaatgaggctgcttttctggaaatgcttaaaggttttcaacttgatgcggacaaagta
aaaatctgtaaacattgctggattaataaacgtttcaactttgtaaacagtaaatccatc
aagtacaataatgaactcatctgcctggaatgtgcaaaagaagaactattgcgtgcagtc
cgttcggctggtgtgcagtatggggaaaaatccatagatttcctggagcaggtgctttca
aaaacccgagaccttgacaggactatccggatgctgagccctgaaaggcttgaccctgaa
ttcacacgctatgacactataagaacaaatcctgccagtgctacagttagggtaaaaagc
ctgcctctgcaaaagaaatttaaggaaatgctgctcgaaaaatccgagaccctgctgccc
gtccagacattatcgatagaagccgggcttctggaagggaaaaaccagtttgtagtctcg
gcaacagcaactggaaagaccctcataggggagatggcaggaatccagaacctcttcaac
aaaaaaggaaaaatgctctacctcgtccccctggttgcacttgcaaaccagaagtatgaa
cagttcaaagaacgatattcaaaactcgggttcacaacctccataaagatcggagcaatt
cttataaaaacttctcagcgcgtgaagatgcagaccagtccgggtgcggatattattgta
gggacctacgagggtatagaccacatgcttcggtcgggaaatgccgattttctgggcaaa
atcggaactgtggtagtggatgaagtccatactctcgaagaccaggagaggggccacagg
ctggatgggcttatcggaaggttgagatatgtggcacccgaagctcagttcatctatctc
tctgcaactgttgcaaatcccgcaggctatgcgaagaaacttggagctcagcttgtccgt
tacgagcacaggccggttcctattgacaggcatcttcttttctgccaggaaaacgaaaaa
gcaaagttgatttcccagctcgcgaaagaagaatattcagtgttctcttccaaaaagcac
agaggacagacaattgtctttacaaattcccgtcgaaactgtcacaagcttgcaggagct
ctttctattcaggcggctccctatcatgccgggctttcacagtacgagagaaagaaagtt
gaaactcgttttgcaaaaggagagattccggtaattgtgaccacggctgctcttgcggct
ggggttgattttccggcttcccaggtgatctttgaatccctggcaatgggaattgactgg
atatcagtccaggattttctgcagatgagcggaagggcagggagacctgactatcatgat
aggggagttgttgtgcttatgcccgtgcctggaaaatcatattcaggttcacagtccgat
accgaagaagaggttgcaattaaactgctccagggagaaatgatctcagcaggcgtacat
tacggagaagccgaacagttcgaggaagtgcttgcatcggttgcagttacctcctcggtg
caggacctcagaatgatccacaaccagatgtttggagactatgacctggataagttggtt
ctgcgtcttcagagctaccgttttgtggaaaaaaaaggaaaccgaataacgcttacgcgg
tttggaaaaattactgcagcacatttccttccggtatcgaaagcttttctgattcgagat
gcagtgcttggagataatgaacccctgaagatcgcaacgaacctggagttttttgatgca
gcatatttcaagtatgcaaaccagataggaagctccctgcatgtgaatatgccttcaagg
atttttcagggagctacccttgatataatttttgacggggagtctctttcccagcttgat
gcaaaactccaggaactcctgttaaactttgcttcggactttttaacctgtaaatgcaaa
gattcgccttactgcggatgcgcagaacagaagttttcggaaaaaataatcaagctacgt
acagaagcgcttgagcctgcacagatagtaaataaacttgaaaataaatacggcatctca
gcctatcagggtgatgttttcgggtacctggacaacgcagtcaggaaccttgacgccgtg
gaacttatagcaaaagtacactctaaaaagggagttgcagaggaagcaaaaaaacttaaa
aagaaagtccagggttaa
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