Methanosarcina sp. Kolksee: MSKOL_2084
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Entry
MSKOL_2084 CDS
T03821
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
mek
Methanosarcina sp. Kolksee
Pathway
mek03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSKOL_2084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mek03400
]
MSKOL_2084
DNA repair and recombination proteins [BR:
mek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSKOL_2084
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSKOL_2084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
AAA_16
P-loop_SecA
Kinesin
ACDC
SWI2_SNF2
Flavi_DEAD
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AKB47861
LinkDB
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Position
complement(2693888..2695900)
Genome browser
AA seq
670 aa
AA seq
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MKSSDKTSQAVSNKISETLRDARYWDSPQFKLVSDFEPKGSQPQAIEKLVEGLKEGERYQ
TLLGVTGSGKTYTIANVINQVRKPTLVIAHNKTLAAQLYNEFREFFPENRVEYFVSYYDY
YQPESYLPARDQYIEKDAQINPKIEQMRLAATASLMSRQDVIVVASVSCIYGLGNPENFQ
KMGFELKVGDKVPRKEILQKLVEIQFERNDLELMPGRFRVKGDTIDIIPGYFDNIIRIEL
FGDEVDRISEVDKQTGQRTEEMDYFFVYPARHYVIPEEEQKSAIQSILEELEEHLPELGL
LESHRLKQRTIYDMEMIQETGSCKGIENYSRHFDHRQPGEQPFCLLDYFPEDFLMVIDES
HQTIPQLHGMYNGDRSRKKNLVDYGFRLPSAYDNRPLKFDEFEEYMKNVIFVSATPSDYE
HEHSAQIVEQIIRPTGLVDPEVEIRPLEGQVRDVMQEVRKIVERGDRALVTTLTKKLAEE
LTEYLARNEIKARYLHSDIKTMERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGIL
DADKEGFLRNSKSLIQIIGRAARNASSKVVLYADNMTDSIKSAVTETERRRSMQIAYNKE
HGIVPETIRKPIREKVVDITDTKHIPKTDIPNMIIELDTEMREAADRLDFERAIQVRELI
KKLEKEIKVV
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcttcagataagacatcccaagctgtatctaataaaatatccgaaacactacga
gatgcccgatattgggacagcccgcagttcaagctggtttccgattttgagccgaagggt
tcccagccacaggcaatcgaaaaacttgtggaggggctgaaagaaggagagcgataccag
accctgcttggggtaacagggtcagggaagacctataccattgcaaacgttataaaccag
gtaaggaaaccgacccttgttattgctcacaataaaacccttgccgcccagctttataat
gagttcagggagttcttccctgaaaaccgggtggagtattttgtttcctattacgactat
tatcagcctgagtcctatcttcctgccagggaccagtatattgaaaaggatgctcagatt
aacccgaagatagagcaaatgcggcttgctgctactgcttctctgatgtcacgccaggat
gttattgtagttgcatccgtatcctgtatctacgggcttggcaatcctgagaatttccag
aaaatggggtttgaattaaaggttggagataaggttcctagaaaagaaatcctgcaaaag
ctcgttgaaatccagtttgagcgaaacgaccttgaacttatgccagggcgcttcagggta
aaaggagataccattgatattattcccggatactttgacaatattatccggattgagctc
ttcggagatgaggtcgaccggatttctgaagtggacaagcagaccggtcagcgaacggaa
gaaatggactatttctttgtttatcctgcaaggcactatgtaattcctgaggaagagcag
aaaagtgcaattcagtccatcctcgaagagcttgaagaacatcttcctgagcttggtctt
cttgagtcgcacaggttgaagcagcgcacgatttatgatatggaaatgattcaggaaacc
ggcagttgtaagggtattgaaaactactcaagacattttgaccacagacagccgggagaa
cagcctttctgcctgcttgactatttccctgaggatttcctgatggtaatcgatgagagt
caccagaccatacctcagcttcacgggatgtacaacggagaccgctcaaggaagaagaac
cttgttgactatgggttcaggcttccgagtgcctacgataacaggcctctaaagttcgat
gaatttgaggagtacatgaaaaacgtgatttttgtttcggcgactccctcagactatgaa
catgagcattcagctcagatcgtggagcagattatccgtcctacaggacttgttgaccct
gaagtggaaattcgtcctcttgaaggtcaggtaagggacgttatgcaggaagtacggaag
attgtggaaaggggagaccgtgctcttgtaactaccctgacaaagaagcttgcagaagaa
ctgactgagtaccttgccaggaatgaaatcaaagctcgttacctgcactcggacattaaa
acgatggaaagaactgagattatccgcgagctccgccttggcaaattcgatgtccttgtc
gggatcaacctgctcagggagggacttgatattccggaagtgggtttcattggcatcctg
gatgcggataaagaaggcttccttagaaactcaaaaagccttatccagatcataggccgc
gcagcccggaacgccagctcgaaggttgtcctgtatgccgacaatatgacggattctatc
aaaagtgccgttacagagacagaacgccgccgctccatgcagattgcctataataaggaa
cacggcatcgtcccggaaactatcaggaaacccatcagggaaaaggtcgtggatatcacc
gacaccaaacacatcccgaaaaccgatattcccaatatgattatcgaactggatactgaa
atgagggaagctgctgacaggctggacttcgaacgggcaatccaggtaagggaattaata
aagaagctggagaaagagataaaagtagtctga
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