Methanosarcina sp. Kolksee: MSKOL_2574
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Entry
MSKOL_2574 CDS
T03821
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
mek
Methanosarcina sp. Kolksee
Pathway
mek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSKOL_2574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mek03019
]
MSKOL_2574
Messenger RNA biogenesis [BR:
mek03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSKOL_2574
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSKOL_2574
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
ECR1_N_2
S1
S1_RRP5
HypA
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
AKB48351
UniProt:
A0A0E3LJT9
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All DBs
Position
3338267..3339226
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AA seq
319 aa
AA seq
DB search
MIRIRKSKTTRKKLTGPSEGKPVAENVTQITSESRDQFKGQSRDQFKAQPREQVKTHPRE
QSRDQYKSQSRDHFRGHPREQFKGQSRTQSKDQFRGDQGKKRRFPYQKKGSRERSDLPEP
RVPYETKTPEEELEKGGFVLPGELVGTTEEFKPGEGTTVSAGDIYSTATGNVLIDRKARV
VSVRPRTLTPNILKVGDIVYGKITDVRESGAMVEVAGIEGKEEREIVNVRSGDIHVSNVR
DSYVKRLSDEFRPYDIVRARVLDTERIRLTTAEDSLGVVKAYCSNCKGELVLEGKKLKCP
VCNMTETRKISTEYGKGIK
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgattagaattagaaaaagtaaaactacgagaaaaaaattgactggcccgagcgaagga
aagccggttgccgaaaatgtaactcaaattacttcagaaagcagagaccaattcaaaggc
cagtcgagagatcagtttaaggcccagcccagggaacaggttaaaactcacccaagggag
cagtccagagatcaatataagagccaatcaagagatcatttcagggggcatcccagagaa
caatttaaaggtcagtccaggactcagtcaaaggaccagtttaggggagaccagggcaag
aaaagaaggttcccttaccagaaaaaaggctcaagggaaagatcggatctgcctgaaccc
agagttccttacgaaaccaagactccggaagaagagcttgaaaaaggaggttttgtgctt
cctggagagcttgtgggaacgactgaagagttcaagcccggggaagggacaactgtgtct
gccggagatatttactctacagctaccggaaatgtacttattgacaggaaagccagagta
gtttcggtcaggccacgcacactcactccgaatattcttaaagtaggagatattgtctat
ggaaagataactgacgtgcgcgaatccggagcaatggtggaagttgcaggaattgaaggc
aaagaagaaagggaaattgtcaatgtgcgttcgggagacatccatgtgtcgaatgtgcga
gactcttacgttaaaagactttcagatgagttcagaccttatgatatagtcagggccagg
gttctcgacactgaaagaatacgccttacaacagctgaggattccctgggagttgtaaaa
gcctactgttcaaactgcaaaggagaactcgtgcttgaagggaaaaagcttaaatgcccc
gtctgcaatatgaccgaaactcgcaaaatctcaaccgagtacggaaaaggaataaaataa
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