Methanosarcina sp. Kolksee: MSKOL_2994
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Entry
MSKOL_2994 CDS
T03821
Name
(GenBank) tRNA-intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
mek
Methanosarcina sp. Kolksee
Brite
KEGG Orthology (KO) [BR:
mek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mek03016
]
MSKOL_2994
Enzymes [BR:
mek01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
MSKOL_2994
Transfer RNA biogenesis [BR:
mek03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
MSKOL_2994
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
tRNA_int_end_N2
Motif
Other DBs
NCBI-ProteinID:
AKB48771
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Position
3881653..3882705
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AA seq
350 aa
AA seq
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MKTQLKGDRVLAGKEAVAELYKNGYFGRPKGEGLELSLVEAAFLLSRGKLEIELEGILLD
FRALFEQASLRQPNFELKYIVYKDLKERGYYVQPSAADFRVYPRGSHPGKSAANIFVHVQ
SERQLLPVKLLQDSVTSAENVHKQFILAVVDEESDLTFYEVKTAAPEGEMSELYPAVKAD
ATFLEDRVIAWDAQASETLYKRGFYGKMLDSERLQLSLVESLYLFSRGVITVRDRKGKVF
SFDEFVEKASEIESSFLRKYSAYKNLRDSGHVVKTGFKFGTNFRVYRKVESIEKIPHSEY
LVNSIPADFEFRLPVMSGAVRLANSVRKTMLFAVEKGEEIEYLDISRTKM
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacacaacttaaaggagaccgggtccttgccggaaaggaagcggtagccgaactt
tataaaaatggttacttcgggcgtcctaaaggcgaggggcttgaactctctcttgtagaa
gctgcttttctcctgtccagaggaaagctcgagatcgaactcgaaggcatactgctagat
ttcagagcccttttcgaacaggcttctttgaggcagccgaattttgagctgaaatacata
gtttataaggaccttaaagaacggggatattatgtccagccatcagctgcggatttccgg
gtgtatcccagaggcagccacccgggtaaaagtgcagcaaacatttttgttcatgtccag
tctgaaaggcagctccttcccgtaaaacttcttcaggactcagttacctcggcagagaac
gtgcataagcagtttatccttgctgtggtggatgaagaaagtgaccttactttctatgag
gttaaaaccgcagctcctgaaggagaaatgtctgagctatatcctgctgtcaaagccgat
gccactttcctggaagacagggtaatagcctgggatgctcaggcttcggaaactctctat
aaaaggggtttttacgggaaaatgctggactccgaaaggcttcagctttcccttgtagaa
tccctttacctcttttcaagaggcgtaataacggttcgggacaggaaaggtaaagtgttt
tcgtttgacgagtttgtcgagaaagcctcggagattgagagctctttcctgagaaagtac
agcgcatataaaaatctcagggattcgggacatgtggttaaaaccggttttaaattcggg
acgaatttcagggtataccgaaaggttgagtcaatagaaaaaattccgcactcggaatat
cttgtaaattccattcctgcggattttgaattcaggcttccggttatgtccggagctgtc
aggctcgcaaacagcgtcaggaaaacaatgctttttgcggttgagaaaggagaagaaatc
gaataccttgacatcagccggacgaagatgtaa
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