KEGG   Methanosarcina sp. Kolksee: MSKOL_3247
Entry
MSKOL_3247        CDS       T03821                                 
Name
(GenBank) Flap structure-specific endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
mek  Methanosarcina sp. Kolksee
Pathway
mek03030  DNA replication
mek03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:mek00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSKOL_3247
   03410 Base excision repair
    MSKOL_3247
   03450 Non-homologous end-joining
    MSKOL_3247
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mek03032]
    MSKOL_3247
   03400 DNA repair and recombination proteins [BR:mek03400]
    MSKOL_3247
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mek04147]
    MSKOL_3247
DNA replication proteins [BR:mek03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSKOL_3247
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSKOL_3247
DNA repair and recombination proteins [BR:mek03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSKOL_3247
Exosome [BR:mek04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   MSKOL_3247
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc
Other DBs
NCBI-ProteinID: AKB49024
UniProt: A0A0E3QHC1
LinkDB
Position
4208166..4209182
AA seq 338 aa
MGTDIGDLLQKRKVELSDLTNQVVAIDAFNTLHQFLSIIRQRDGSPLVDSAGRVTSHLSG
LLYRTASLVEAGVKPLFVFDGKPPDLKSETLDRRKEVRESSREKWENAKAVGDLESAYKY
AQASSKVNQEIVEDSKYLLDIMGVPFVQAPSEGEAQAAHMVLKKDANCVASQDYDSFLFG
APIVVRNLAVTGKRKLPGKNVYVDVEPEKIELDETLKALEITREQLIDIAICVGTDYNKG
LEKVGPKTALKLIKKHGDIYVVLREKKAEIDAVDQIRDIFLHPEVTDDYKIRWGKPDSEK
LLEFLCESHDFSIDRVGKAAERLKAASGARQKTLDQWF
NT seq 1017 nt   +upstreamnt  +downstreamnt
atgggcacagatataggcgacctgctccagaaaagaaaagttgagctttcggatcttaca
aatcaggtagttgcaattgatgcgtttaatactttacaccagtttttgagcattattcgc
cagcgggatggaagtcctctggttgattctgcagggagagtgacctcacatctctcaggc
ctgctctaccggacagcgagccttgtagaagccggtgtcaagcctctttttgtttttgac
ggcaaacctccggatctcaagtccgaaaccctggaccgaagaaaagaagtcagggaatcc
tccagggaaaagtgggagaatgcaaaggctgtcggggatcttgaatcggcatataagtat
gctcaggcttcttcgaaagtaaaccaggaaattgttgaggactccaaatatctccttgac
attatgggagttccctttgttcaggcacccagtgagggcgaagcccaggctgcacatatg
gtcctcaaaaaagatgcaaactgcgttgcttctcaagattacgattcatttcttttcggg
gctcctattgttgtccggaatctggccgtaacaggaaaacgaaagcttccgggaaaaaac
gtttacgttgacgtcgaacccgaaaaaatcgagctggatgagacactcaaagccctagaa
attacaagggaacagctcatagatatcgctatctgtgtgggcacggattataacaaaggg
ctggagaaagtaggccccaaaacagcccttaaactaataaaaaagcatggggatatttat
gtcgtactccgcgaaaaaaaggcagaaattgatgctgtagaccagataagagatatcttt
ctccaccctgaagtaacggatgattacaagataagatggggaaaacctgattctgaaaaa
cttcttgaatttctctgcgagagccatgatttctcaattgatagggtgggaaaagctgca
gaacggcttaaagctgcctcaggagccagacaaaaaactcttgaccagtggttttaa

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