KEGG   Methanosarcina sp. Kolksee: MSKOL_3397
Entry
MSKOL_3397        CDS       T03821                                 
Name
(GenBank) Signal recognition particle, subunit Ffh SRP54
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
mek  Methanosarcina sp. Kolksee
Pathway
mek02024  Quorum sensing
mek03060  Protein export
mek03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:mek00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    MSKOL_3397
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    MSKOL_3397
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    MSKOL_3397
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:mek02044]
    MSKOL_3397
Enzymes [BR:mek01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     MSKOL_3397
Secretion system [BR:mek02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   MSKOL_3397
  Eukaryotic Sec-SRP protein
   MSKOL_3397
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N CbiA AAA_22 6PF2K Zeta_toxin AAA_33 AAA_16 APS_kinase MobB MeaB nSTAND3 ParA KTI12 Thymidylate_kin AAA_17 AAA_30 PFOR_II ATP_bind_1 LpxK
Other DBs
NCBI-ProteinID: AKB49174
UniProt: A0A0E3QHN1
LinkDB
Position
4384019..4385350
AA seq 443 aa
MVMEKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERA
MKEDPPAGMNPREHVIRIVYQELMEIIGKGAVIQLKPQIIMMVGLQGSGKTTSTAKLARY
FQRKGLKAGVIAADTFRPGAYHQLKTLCEKLNVAFYGEENNPDAVEITRNGLKALEKYDV
KIVDTAGRHALEADLIEEMEQINAVAKPNQKFMVLDAGIGQQASQQAHAFNDSVGITGVI
ITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGDLKSLMEK
AEETLSEEDVNVEALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLPLGMGGMGGVKLSDE
MFQATSDKMKNYKIIMDSMTEEEMNDPKLIGGSRIKRISRGSGCSPEEVRELLKYHKTMQ
TALKGFRGGKFNIQKMMKKRLGM
NT seq 1332 nt   +upstreamnt  +downstreamnt
atggtaatggaaaaacttggagactccttacagggggcactcaagaagctgatcggcgcg
gggcgaattgatgagcgtacggtcaatgaagtagtaaaagatatccagcgggctctgctc
caggccgacgtgaatgtaaaacttgttatgggaatgtcccagagaatcaaagagcgtgcg
atgaaagaagaccctcctgcaggtatgaacccgagggagcacgtaatccgcatcgtatac
caggaattaatggaaattatcggcaaaggagctgtgattcagctcaagccgcagattata
atgatggttgggcttcagggaagcggaaaaactaccagtacagcaaagcttgctcgctac
ttccagagaaaaggactcaaagcaggggttatcgccgcagataccttccgacctggcgca
tatcaccagcttaaaactctctgtgagaagctcaacgtagctttctatggagaagaaaac
aatcccgatgccgttgaaattaccagaaacgggctcaaagccctggaaaaatacgacgta
aaaattgtggataccgcaggccggcatgctcttgaagccgatctaatagaagagatggaa
cagatcaacgccgttgccaagccaaaccagaagttcatggtactggatgcaggtatcgga
cagcaggcaagccagcaggcacatgcatttaatgattctgtcgggattacgggcgttatc
ataacgaaacttgacggcactgcaaaaggaggcggagccctgtctgccgtttccgaaaca
aaagcccctattgcctttatcggcgttggggaaacgccggaagattttgaaaaattcgaa
gccgacaggttcatttcaaggcttcttggcatgggagaccttaaaagcctgatggaaaaa
gctgaagagacccttagcgaagaagacgtaaatgtcgaagccctgatgcaggggagattc
accctcaaggatatgtacaagcagcttgaagccatgaacaaaatgggccctctcaaacag
attatgtccatgctgccactaggaatgggcgggatgggaggcgttaagctctcagatgaa
atgttccaggctacaagtgacaagatgaagaattacaagataatcatggattccatgact
gaagaagaaatgaatgaccccaagcttataggcggttcccggatcaaaaggatttcaaga
ggctcgggatgcagccctgaagaagtaagggagcttctgaaatatcacaaaaccatgcag
acagctctaaaaggcttcaggggtggaaaattcaatattcagaaaatgatgaagaaaaga
ctcgggatgtaa

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