Metabacillus elymi: HUW50_09520
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Entry
HUW50_09520 CDS
T06752
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
meku
Metabacillus elymi
Pathway
meku03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HUW50_09520 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meku03400
]
HUW50_09520 (mfd)
Enzymes [BR:
meku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUW50_09520 (mfd)
DNA repair and recombination proteins [BR:
meku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HUW50_09520 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
CDI_toxin_EC869_like
AhpC-TSA
Motif
Other DBs
NCBI-ProteinID:
QNF27731
UniProt:
A0ABX6S7I1
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All DBs
Position
2022113..2025643
Genome browser
AA seq
1176 aa
AA seq
DB search
MNSLQQYFYDTDDFKTIVSGIEEGLKEQLVAGLSGSARTVFTAALYNDLKKSVLIVTHNL
YQAQKIYEDLVHLIVEDVYLYPVNDLIASEIAIASPELKAQRIEVLNRLAEGKRSIIVAP
VAGVRRLLPPTEIWKDKQLKLTLGQDIDLEEYIQQFISLGYERTDMVSSPGEFSVRGGII
DIYPLTEENALRIELFDTEIDSIRSFNIDDQRSIHMLNEISIGPAIEMIVNEDSKARSIQ
AVEFGLAKSLKKMKNEQQKELLIENIQYDLERLRNGQFSQDIFKYSSLIYDKPTSLLDYF
SDNSIVILDEISRIHETYDQLDREEAEWYTSLLEDGKIFQDVKMSHSYVDVVTKSKHPLI
YLSLFLRHVPYTSPQNILNLSCKQMQNFHGQMNVLKNELDRWKKSNYAVVFLGVNEERTK
KLEQVLEDYEINATILGDKEALVSGKVCIIEGDLQTGFELPMQKLAVITEEELFKKRVKK
QVRRQKLSNAERIKSYSELEIGDYVVHVNHGIGKYLGIETLEINGIHKDYLNIRYQGSDQ
LYVPVEQIDQVQKYVGSEGKEPKIYKLGGSDWRRVKKKVESSVQDIADDLIKLYAEREAS
EGYAFSPDGEMQKEFELAFPYQETEDQIRSIQEIKKDMERLRPMDRLLCGDVGYGKTEVA
IRAAFKAIADGKQVALLVPTTILAQQHFETVRERFQEYPIKVGLLSRFRSRKEINETKKG
LSNGTVDMVIGTHRLLSKDVLYKDLGLLIIDEEQRFGVTHKEKIKQLKSNVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVRESIEREMARGGQVFFLYNR
VEDIERKAEEISMLVPDARVTYAHGKMTENELESVMLNFLEGEFDVLVSTTIIETGVDIP
NVNTLIVNDADKMGLSQLYQLRGRVGRSNRVAYAYFTHRKDKVLTEVAEKRLQAIKEFTE
LGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERQTDPTKEKAIEV
EIDLQVDAYLPQEYITDGRQKIDMYKRFRAITSLEELEELQEEIIDRFGEYPVEVSYLFQ
IARIKVFAIQERVELIKQDKDVINILIEEGASNKIDGHRLFELSNRYNRIVGLGMDGSRL
KLTIATKGLAVPKWLDIINELLNGLAQVKKEEMTLN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
ttgaatagtttgcaacaatacttttatgatacagacgattttaaaacaatcgtttcagga
atcgaagaaggattaaaggaacaacttgtagctggtttgtctggttcagcgagaacagtt
tttactgcagctctttataatgatttaaagaaatcagtgttaattgtcacacataacctt
taccaagctcaaaaaatatatgaggatttagtccacttaatagtggaagatgtttatcta
tatcctgtgaatgatttaattgcatctgaaattgccattgctagtccagagctaaaggct
caaagaattgaggttcttaatagacttgctgaagggaagcgttcaatcattgtcgcacca
gtggcaggggttagacgcttgcttccacctacagagatttggaaagataagcagttgaaa
ttgacactaggacaagatattgatctagaggaatatattcaacagtttatttcacttggc
tacgaaagaactgatatggttagctcaccgggagaatttagtgttcgaggtggcataatt
gatatttaccctctaaccgaagaaaatgcacttcgcatagaactgtttgatacggagatt
gactccattcgttcatttaatattgatgatcaacgttcgatacatatgctgaatgagatt
tctattggacctgcaattgaaatgattgtaaatgaagattctaaagctagaagcatacaa
gcagtcgaattcggtttagcaaaaagtctaaaaaaaatgaaaaacgaacagcaaaaggaa
ttacttattgaaaatattcaatatgatttggaacgcctgcgtaatgggcaatttagccaa
gatatctttaaatattcctcgcttatctatgataagcctactagtttactagattatttt
tcagataactctattgtaatccttgatgaaataagtagaattcatgaaacatatgaccag
ttagacagagaagaggctgaatggtatacaagtctacttgaagatggaaagatttttcaa
gatgttaaaatgtcacattcctatgtggatgttgtgacaaaatccaagcatcccttaatc
tatctatcattattcttaaggcatgtcccttatacaagcccccaaaatatcttaaattta
tcatgtaagcaaatgcaaaactttcacggtcagatgaatgttttaaaaaatgaacttgat
cgttggaaaaaatcaaattatgctgttgtatttttaggggttaacgaggaacgtactaaa
aagttagaacaagttttagaggactatgaaataaacgcaactatactaggtgataaggaa
gcattagttagcgggaaagtttgcattatcgaaggagaccttcagactggtttcgagcta
cctatgcaaaagcttgctgtgatcactgaagaggagcttttcaaaaaaagagttaaaaaa
caggttagaaggcagaagctttctaatgctgaacgaataaagagctattccgaattggag
attggtgattatgtcgttcatgttaatcatgggataggtaaatatctcggtattgaaaca
cttgagattaatggaattcataaagattatttaaatattagatatcaaggtagcgatcaa
ttatatgtaccggttgagcaaatagaccaagtacaaaagtatgtaggatcagaaggtaaa
gaaccaaagatttacaagcttggtggaagtgactggcgtagagttaagaagaaagtagaa
tcatctgtacaagatatagccgatgatttaattaagctatatgcagagcgtgaggcgagt
gaagggtatgcgttttcacctgatggggaaatgcagaaggaatttgagttagcctttccg
tatcaagaaacagaggaccagattcgctctattcaagaaattaagaaggacatggagcgc
ctacgtccaatggaccgacttctatgtggtgatgttggttatgggaaaacagaagttgca
ataagagcagcgtttaaagccattgctgatggaaagcaggtcgctttgttagttccaaca
acaatcctggcacaacagcattttgagacagttcgtgagcggtttcaagagtatccaata
aaggtaggtctgctaagtcgctttagatctaggaaagaaattaacgaaacgaaaaaaggg
cttagtaatggaacagtagatatggttatcggtacgcacagactattatcaaaagatgtt
ttatataaagatttaggattacttataatagatgaagagcaacgttttggtgtaacacac
aaagagaagataaagcagttaaagtcaaatgttgatgtactaacattaaccgctactcca
attcctagaactttacatatgtcaatgctaggggttcgagatttatctgttattgaaaca
ccgcctgaaaatcgttttccagtgcaaacatatgttgttgaatacaatggtgctcttgta
agagaatcaattgaacgagaaatggcacgtggcggtcaagttttctttttatataacagg
gttgaggatattgaaagaaaggcagaagaaatttctatgcttgtacctgatgctagggtt
acatatgcccatggtaaaatgacagaaaatgaactagaatctgttatgctcaatttcctt
gaaggtgagtttgatgttctcgtcagtacgacaattattgagactggtgtagatattcca
aatgtaaatacattaattgtaaatgatgccgataagatgggtttatcacagctttatcag
ctcagaggtagggttgggcgttcaaatcgtgttgcttatgcttatttcacacatagaaaa
gataaggttctaacagaagtagctgaaaaaaggctacaagctattaaagaatttacagaa
ttgggctctggatttaaaattgcgatgcgtgatctatcaattaggggtgcgggtaatttg
ttaggagcccaacagcacgggtttatcgattcagttggatttgacctttattcacaaatg
ctaaaagaagcaattgaagaaaggcaaacagatccaacaaaagaaaaagcaatcgaggtt
gaaattgacctgcaggtggatgcttatttaccacaagagtatattacagatggtcgtcaa
aaaattgatatgtataagcgttttagagctattacatcgcttgaagaattagaagagcta
caagaagaaatcattgacagattcggagaatatccagttgaggtttcttacttgttccaa
atagcacgaataaaggtatttgctattcaagagagagtggagcttattaagcaagataaa
gatgtaattaatatactgatcgaagagggagcaagtaataaaattgatggtcataggctt
tttgaattaagcaatagatataaccgaatcgtaggactaggtatggatggtagcagactg
aagctaactattgctacaaaaggactggctgtcccaaaatggttagatattattaatgag
ttacttaatggcttagcacaagtgaaaaaagaggaaatgaccctaaattaa
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