Metabacillus elymi: HUW50_09875
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Entry
HUW50_09875 CDS
T06752
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
meku
Metabacillus elymi
Pathway
meku03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meku00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUW50_09875 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meku03021
]
HUW50_09875 (rpoC)
03400 DNA repair and recombination proteins [BR:
meku03400
]
HUW50_09875 (rpoC)
Enzymes [BR:
meku01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUW50_09875 (rpoC)
Transcription machinery [BR:
meku03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUW50_09875 (rpoC)
DNA repair and recombination proteins [BR:
meku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUW50_09875 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QNF27780
LinkDB
All DBs
Position
2091592..2095191
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMSIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVTTDTGDTPLEKKQLLSEKEYRAYREKYGNTFQASMGAEAIKKLLS
DIDLDKEVDALKEELKTAQGQRRTRAIKRLEVLEAFRNSGNHPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGAIGEGMIFNDINEALLAYQNGYVHLHTRVAVN
AGTLNKQSFTEKQNKMLLITTVGKLIFNEILPESFPYMNEPTKQNIEEKTPDNYFVETSV
NVKEHIAAQEEIAPFKKGILGKIIAEIFKKFHITETSKMLDRLKNLGFRYSTKAGITVGV
SDIIVLKEKQEIIGEGQNKVDNVLKQFRRGLITEDERYERVISIWSAAKDNIQGKLMASL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRDDDCGTDRGIRAESIREGTEIIEKLD
ERLIGRYCRKVVKHPETGEIIVNENELITEDIAVEIIDAGIDHVWIRSAFTCNTRHGVCK
KCYGRNLATGSEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAIISEISGVVAEINEVRDKQQEIVIQGDVESRSYTAPYNARLKVTQGDKIES
GQVLTEGSIDPKELLKVKDLQAVQQYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
MDAGDTDVLPGTLLDVHQFTDANKQVLLEGKRPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMPRYRQAEPISKVEQMEEAVSVD
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatgtaaataattttgaatatatgagcatcggcttagcttcaccagacaagatt
cgttcttggtcttttggtgaggttaagaaaccagaaacgattaattatcgtacactgaag
ccagaaaaagatggtttgttttgtgaacgcatattcgggccaactaaagactgggaatgc
cattgtggtaaatataaaagagtacgttataaaggtgtagtatgtgatcgctgtggagtt
gaagttactcgtgccaaggtaagacgtgagagaatgggacatattgaattagctgctcct
gtctcacatatttggtactttaagggtattcctagccgtatgggcttagtgttagacatg
tctcctcgtgctttagaagaagtaatctattttgcttcatacgtaacaacagacacaggt
gatactccattagagaaaaaacagctattatctgagaaagaataccgtgcatatcgcgaa
aaatacggtaatactttccaagcatctatgggtgcagaagctattaaaaagcttttatct
gatattgatttagataaagaagttgacgctctaaaagaagaactaaaaacagctcaagga
caaagaagaacgcgtgcaattaagcgtctagaagttcttgaagcattccgtaattctggt
aatcatccatcatggatgattcttgatgttcttcctgttattccacctgagcttcgtcca
atggtacagcttgatggtggtcgttttgcaacatctgatttaaatgacttatacagacgt
gttattaaccgtaataatcgtcttaagcgtttattagatttaggcgctcctagtatcatt
gttcaaaacgaaaagcgtatgctacaagaggcagttgatgctcttattgataatggacgt
cgtggtcgacctgttacaggaccaggtaaccgtccgttaaaatccctttctcatatgctg
aaagggaaacaaggacgtttccgtcaaaacctattgggtaaacgtgttgactactcaggt
cgttcggtaatcgttgttggaccaaacctgaaaatgtatcaatgtggattacctaaagaa
atggcccttgagttattcaaaccattcgtaatgaaagagttagttgaaaaaggattagct
cataatataaaaagtgcgaaacgtaaaattgagagagtgcaaccagaggtatgggatgtt
ttagaatctgtgattaaggaacatccagtattgcttaaccgtgcacctactcttcataga
ttaggaattcaagcatttgaacctactttagttgaagggcgtgcgatccgtctgcatcca
cttgtatgtactgcatataatgcggactttgatggtgaccaaatggcggttcacgttccg
ttatcagctgaagcacaagctgaagcgcgtattttaatgcttgctgctcaaaacattctt
aaccctaaggatggtaagccagttgttactccttctcaggatatggtgttaggtaactat
tacttaacattagagcgtgagggtgcaattggtgagggtatgattttcaatgatataaat
gaagcactacttgcatatcaaaacggttatgtacatttacatacacgtgtggctgttaat
gctggtactttgaataaacaatcctttaccgaaaagcaaaacaaaatgttactaattacc
acagttggaaagttaattttcaatgaaattttaccggaatcattcccgtatatgaatgag
ccgactaaacaaaacattgaagaaaaaacaccagataattattttgttgaaacaagcgtg
aatgttaaggagcatattgcagcacaagaagaaatagctccatttaaaaaaggtattctt
gggaagattatcgctgagatcttcaagaagttccatataactgaaacttcaaaaatgcta
gatcgtcttaagaatcttggattcagatactccactaaagcagggattactgttggtgtt
tctgacattatcgttttaaaagaaaagcaagagattattggcgaaggtcagaataaagtt
gataatgtattaaagcaatttagaagaggtttaattactgaggacgagcgatatgagcgc
gttatatcgatttggagtgcggcaaaagataacattcaaggaaaattgatggcatctctt
gataaacgtaacccaatctttatgatgagtgactctggtgcccgtggtaatgcatcaaac
ttcacacaacttgctggaatgcgtggtctaatggccaacccagccggacgtattattgaa
ttaccgattaaatctagtttccgtgaaggtttaacagttttagagtacttcatatctaca
catggagctcgtaaaggtcttgcagatacagccttgaaaactgctgactctggttactta
acacgtcgacttgttgacgttgcccaggatgttatcattcgtgatgatgactgtggaaca
gatcgaggaatacgtgcggagtcaattagagaaggtacagaaattattgaaaaacttgat
gaacgtttaatcggtcgatattgccgtaaggttgttaaacatcctgaaacaggtgaaatc
atcgttaatgaaaacgagttaatcactgaagatatcgctgtagaaattattgatgctggt
attgatcatgtatggattcgttctgcatttacatgtaacacaagacatggtgtttgtaaa
aaatgttacggacgaaaccttgcaacaggtagtgaagtcgaggttggagaagcagttgga
attatcgctgcacaatctatcggtgaacctggtacacagttaacaatgcgtactttccat
actggtggggtagcaggagacgatatcactcaaggtttacctcgtattcaagagctattt
gaggctagaaaccctaaaggtcaagcaattatttccgaaattagtggtgttgtagctgaa
ataaatgaagtgcgtgataaacagcaagaaattgttattcaaggtgatgtcgaatctcgt
tcatacactgcaccatataatgctcgcttaaaggtaactcaaggtgataaaattgagagt
ggtcaagttttaacagaaggttctattgatccgaaggaattacttaaagttaaggatctt
caagcagtgcaacaatatctattacgtgaagttcaaaaagtttaccgtatgcaaggggta
gaaattggagataagcacgtagaggttatggtacgccaaatgctccgtaaagttagagtt
atggatgctggtgatacagatgttttaccaggtacacttcttgatgttcatcaatttaca
gatgccaacaagcaagtattattagagggtaaacgacctgcaacaggtagacctgtatta
cttggtataacaaaagcatcacttgaaactgattccttcttatctgcagcatcattccaa
gaaacaactcgtgttcttacagatgcagcaattaaagggaaacgtgatgaactattaggg
cttaaagaaaatgttattattggtaaacttgtaccagccggaacaggaatgccaaggtat
cgtcaagctgaaccaatttctaaagttgaacaaatggaagaagctgtttcagtagattaa
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integrated database retrieval system
