Metabacillus elymi: HUW50_11140
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Entry
HUW50_11140 CDS
T06752
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
meku
Metabacillus elymi
Brite
KEGG Orthology (KO) [BR:
meku00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
meku03009
]
HUW50_11140 (rlmD)
Enzymes [BR:
meku01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HUW50_11140 (rlmD)
Ribosome biogenesis [BR:
meku03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HUW50_11140 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
PrmA
Methyltransf_15
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_11
UPF0020
N6_Mtase
Methyltransf_4
PCMT
TRM
Methyltransf_12
RrnaAD
Methyltransf_23
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QNF27978
LinkDB
All DBs
Position
2342185..2343570
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AA seq
461 aa
AA seq
DB search
MPKLQAPVMKNEYYEVTFEDLTHEGAGVAKVEGFPIFVENALPDERGKIKVIKVKKGFAF
GRLIELYETSKNRIEAPCPIYSQCGGCQLQHFSYEGQLNFKKKQVEQVLVRIGKLDLNNV
KVHPTLGMNDPWNYRNKAQVPIGEREGGLVAGFYQKRSHDIIDMERCLIQQAENDNVVQA
VKKICEQYGIRAYNEEKHKGWLRHIMVRYGLVTKEMMVVFVTKTNDFQHKHEIISQITEL
FPQVKSIVQNINNKRTNVIFGDETKVLWGEEYIYDKIGDVKFAISARSFYQVNPEQTKVL
YDKALEYAGLTGEESVIDAYCGIGTISLFLAQKAKKVFGVEVVPEAIEDAKRNAELNGIT
NAEFAVGEAEAVIPEWNKQGNKADVIVVDPPRKGCDETLLKTILDMKPHRVVYVSCNPGT
LARDLNVLEQGGYETIEVQPVDMFPHTTHVECCSLLVRKDN
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaattacaagcacccgttatgaaaaatgaatattacgaagtaacctttgaagac
ttaactcacgaaggtgcaggtgttgccaaagtagagggattccctatttttgtagaaaat
gcactcccagatgaacgtgggaaaattaaagtgattaaggtgaaaaagggatttgctttt
ggtcgtttaattgaactatatgaaacaagcaaaaatcgtattgaagcaccttgcccaatc
tactctcaatgtggagggtgtcagcttcagcattttagttatgaaggtcaacttaacttt
aagaaaaagcaagtagaacaagtgcttgtacgaattgggaagctagatcttaacaacgta
aaggttcatccaacactcggaatgaatgatccatggaattatcgaaataaggcacaagtc
cctataggagagcgggaaggtggacttgtagcaggcttttatcaaaaacgaagccacgat
attattgacatggaacgatgcctaattcaacaagctgaaaatgataatgtagttcaggct
gtaaagaaaatatgtgaacagtacgggattcgcgcttataacgaagaaaagcataaagga
tggttacgtcacataatggtgcgctatggcctcgttacaaaagaaatgatggtcgtattc
gtaacgaaaaccaatgactttcagcataagcatgaaatcatttcacaaattaccgaacta
tttcctcaagtaaaatctattgtacaaaatataaacaacaaacgcacgaacgttattttc
ggcgatgaaacaaaggtactctggggagaagaatatatctatgacaaaattggtgatgtg
aagtttgccatttcagctcgttccttttatcaagtaaatcctgagcaaacaaaagtgctt
tacgataaggctttagaatatgcagggcttacaggtgaagaatcagttattgatgcatac
tgtgggattggaaccatatcactattccttgcccaaaaagctaaaaaagtatttggtgtt
gaggttgtcccagaagcaatagaagatgcaaagcgaaatgcagagctaaatggaattaca
aatgctgagtttgcagttggagaagctgaggctgttattcctgagtggaataagcaaggg
aataaagcagatgtaattgtagtggatccgccacgaaaaggctgtgatgaaaccttactt
aagacaatactggacatgaagcctcatcgggtagtgtatgtttcctgtaatcctgggaca
cttgcgagggatctgaatgtacttgagcaaggtgggtatgagacgattgaggtgcagccg
gtggatatgtttccgcatacgacacatgtggagtgctgttcactacttgtaagaaaagat
aattaa
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