Metabacillus elymi: HUW50_18895
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Entry
HUW50_18895 CDS
T06752
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
meku
Metabacillus elymi
Pathway
meku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUW50_18895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meku03019
]
HUW50_18895
Messenger RNA biogenesis [BR:
meku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUW50_18895
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
RCC1_2
Motif
Other DBs
NCBI-ProteinID:
QNF29372
UniProt:
A0ABX6S705
LinkDB
All DBs
Position
complement(4117382..4119049)
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AA seq
555 aa
AA seq
DB search
MKFVKNDQVAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
QKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLALGLLRNKLEEHGLLRQTKLI
EIQEEDIIKFRKTSVTFFRTTHSIPDAYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGRDGVLCLLSDSTNSEVPNFTMSERRVGESINEIFRKVDGRIIFATFASNIHRLQQ
VVESAVTHGRKIAVFGRSMEAAIQIGQDLGYINCPKDTFVDAHEINRMPAHRVAILCTGS
QGEPMAALSRIANGTHRQIQIIPGDNVVFSSSPIPGNTLSVSKTINQLYRAGAEVIHGPL
SDIHTSGHGSQEEQKLMLRLMKPKYFMPIHGEYRMQKTHAKTAVDCGVEAENCFIMDNGE
VLAIGDNEVGVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKDFKI
AAGPDIISRGFVYMRESGDLINDAQSLITKHLNKIMERRTSQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgttaagaatgaccaagtagccgtttttgccttaggcggactcggcgaaatt
ggtaaaaacacgtacggtgtgcaattccaggatgagatcgtccttattgacgctggaatt
aaattccctgaggacgagttactaggaattgattatgtcatcccagattacacatattta
caaaaaaacgaagataaaatcaaaggattatttattacgcacggacatgaagaccatatt
ggcggtattccatacttacttcgtcaagtaaacattcctatttatggcgggaagcttgca
ttaggtttattgagaaacaaacttgaagagcacggattgctacgtcagacaaaattaatt
gaaatccaagaagaagacattattaagttcagaaagacatccgttacattctttagaaca
acacatagtatccctgatgcttatggaattgtggtgaaaacaccaccaggaaacattgta
catactggtgactttaaatttgattttacaccggtcggtgaacctgcaaacttaacgaaa
atggcagaaattggtcgtgacggtgtactttgtctattatctgatagcacaaatagtgaa
gtccctaattttactatgtcagaaagacgagtcggtgaaagcatcaatgaaattttccga
aaagttgatggtcgaattattttcgctacatttgcttccaatattcaccgccttcaacag
gtagtagagtcagctgttactcatggtcgtaaaattgctgtatttggaagaagtatggaa
gctgctattcagattggacaagatttaggatatatcaactgtccaaaagatacgtttgtt
gatgcacatgaaattaatcgcatgcctgctcacagagtagcgattttatgtacaggaagt
caaggtgagccaatggctgccctttctcgtattgctaacggcacacatagacaaatccaa
attatcccaggagacaatgttgttttctcttcatcaccaataccaggtaatacacttagc
gtgagtaaaacaattaatcagctttaccgtgctggtgcagaagttatccatggtcctttg
agcgatatccacacctctggacacggtagccaagaagagcaaaagcttatgctccgttta
atgaaacctaaatatttcatgccgatccacggtgaatatcgcatgcaaaaaacgcacgct
aaaaccgcagtagattgtggtgtagaagctgaaaactgttttattatggataacggtgaa
gtattagctattggagacaatgaggttggtgtcgctggtaaaatcccatctggctctgtt
tatattgatggtagtggaatcggtgacattggtaacatcgtattacgtgaccgtaggata
ctatctgaagaaggacttgtaattgtagttgttagcattaatatgaaagactttaaaatt
gctgcaggtcctgatatcatctctcgtggtttcgtatatatgcgtgaatctggagatctt
attaacgatgctcaatcgcttattactaagcatttaaataaaatcatggaacgacgtact
agccaatggtctgagattaaaaatgaaattacagacacattagcacctttcttatatgaa
aaaacaaaacgccgtccaatgatcctaccgattattatggaagtataa
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