Methanobacterium lacus: Metbo_0199
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Entry
Metbo_0199 CDS
T01437
Name
(GenBank) RNA-binding domain, S1
KO
K07573
exosome complex component CSL4
Organism
mel
Methanobacterium lacus
Pathway
mel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metbo_0199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mel03019
]
Metbo_0199
Messenger RNA biogenesis [BR:
mel03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Metbo_0199
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Metbo_0199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
DmmA-like_C
HypA
Zn_Tnp_IS91
Zn_ribbon_3
Zn_ribbon_TOP3B
Zn_ribbon_8
OB_RRP5_4th
SOR_SNZ
Cys_rich_KTR
Zn_ribbon_NOB1
DZR_2
Zn_ribbon_IS1595
DUF7129
FdhE_C
Motif
Other DBs
NCBI-ProteinID:
ADZ08451
UniProt:
F0T7W4
LinkDB
All DBs
Position
202216..202785
Genome browser
AA seq
189 aa
AA seq
DB search
MKTKSGDFVLPGDALGVTEEFVPSDWTYEDDGSIRSLIAGTVSLDNKNKKISIVPKTSSP
SILKSGVAVFGQVSDVRGQRALIKLDSIKDNNRGLVTSFSGGIHISQAQKGYVAKLTDEF
RIGDLIEARVTKIIGVDNVDLTTAEDELGVLKAMCTKCRHYMKQVSKNEVKCPNCGNKER
RNLSTKYEG
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccaaatctggagattttgttttacctggcgatgctctgggagttactgaagag
tttgttccatctgactggacctacgaagatgatggtagcataaggtcattgattgcagga
acagtttcattggacaacaaaaataaaaagatatcaattgtccctaaaacaagttcccca
tcaatactcaaatctggagttgctgtgtttggccaggtatcagatgtaagaggccagaga
gctcttataaaattagatagtattaaagacaataataggggtcttgtgacttccttttca
ggaggaatacacatatcccaggctcaaaaaggctatgttgccaagctcaccgatgaattt
aggataggagatctgatcgaagctagggtaaccaaaataataggggtcgacaacgttgac
ctgacaacagctgaagatgaactgggcgttttgaaggccatgtgtaccaagtgcagacat
tacatgaaacaagtaagtaaaaacgaagtgaaatgtcctaactgtggaaacaaagaaaga
agaaatctttctacaaaatatgagggataa
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