Methanobacterium lacus: Metbo_0556
Help
Entry
Metbo_0556 CDS
T01437
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mel
Methanobacterium lacus
Brite
KEGG Orthology (KO) [BR:
mel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mel03016
]
Metbo_0556
Enzymes [BR:
mel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Metbo_0556
Transfer RNA biogenesis [BR:
mel03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Metbo_0556
Prokaryotic type
tRNA splicing ligases
Metbo_0556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADZ08808
UniProt:
F0T9Y5
LinkDB
All DBs
Position
complement(540056..541501)
Genome browser
AA seq
481 aa
AA seq
DB search
MVMEELKKVRDCVWEIPSSYKKGMRVPGRIYQDDEGIEDLEKGAADQVANVATLPGIQKF
SIGLPDIHFGYGFSIGGVAAFSSRTGVISPGGVGFDINCGVRMVRTNLTEDDVKPRIKEL
IDTLFKNVPSGVGSKGKVRLKEGEIDDVLNNGAEWAVENGYGWESDLKFLEENGKMESAD
SEAVSAKAKKRGIPQLGSLGSGNHFLEIQKMEEIYDEKAAKAFGIEEGQITIMIHSGSRG
CGHQICADYLRTMDKAYKAYNIDLPDRQLACAPVDSQEAQDYFKAMSCAANYAWTNRQMI
LHWVRESFEEVYKKDSQDMNMGVVYDVAHNIAKKEKHTIKGIETEVYVHRKGATRAFGPG
REEIPEEYRKIGQPVMIPGTMGTASYILKGTETAMEETFGSTAHGAGRKLSRAGAKREFN
GDEVKSMLASKGITLKANSMPVVAEEAPGAYKDVDQVVNVCHKAGISLLVGKMIPIGVAK
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggttatggaagaattaaaaaaggttagagattgcgtatgggaaataccttccagctac
aagaagggtatgagggtgcctggaagaatttatcaggatgatgaaggaattgaagatctt
gaaaagggtgcagcagatcaagtcgcaaatgttgcaacactcccaggaattcaaaaattt
tctataggcttaccagatattcattttggatatggatttagtatcggaggagtggcagcg
ttcagttcaagaactggagttattagtcccggcggtgtaggttttgacataaactgtgga
gtgagaatggtgaggactaacctcactgaagacgatgttaaacctcgcatcaaagaactt
attgataccttgtttaaaaacgtgccatcaggtgtaggtagtaaaggtaaagttcggtta
aaagagggagaaattgacgatgttttaaacaacggcgcagaatgggctgttgaaaacggt
tacggttgggaatctgatctcaagttccttgaagaaaatggtaagatggaaagtgcagac
tccgaagcagtcagtgcaaaggctaaaaaaagaggaataccccaactaggatcccttgga
tcaggaaatcacttcttagaaatccagaaaatggaagagatttatgatgaaaaagctgcc
aaagcctttggaatagaggagggccaaatcaccatcatgatccattctggatccagagga
tgcggacatcagatatgtgcagattatttgagaacaatggacaaagcttataaagcttac
aacatcgatcttccagatcgtcagcttgcatgtgcacctgtagattctcaagaagctcaa
gattatttcaaagccatgtcttgtgctgcgaattatgcttggaccaacagacagatgatc
cttcactgggtcagagaatcctttgaagaggtatacaaaaaggattcccaagatatgaat
atgggtgtggtctacgatgtagcacacaacatagccaaaaaagaaaaacataccatcaaa
gggattgaaacagaagtttacgtccacaggaagggtgctacaagggcctttggtcctgga
agagaggaaattcctgaggagtaccgaaaaattggtcagcccgtcatgatccctggtaca
atgggaacagcatcatatattttgaagggaacagaaaccgccatggaagaaacatttgga
tcaacggcccatggtgctggaagaaaactcagtagagctggtgctaaacgagaattcaac
ggcgacgaagtgaagagcatgcttgcatctaaaggaattaccttaaaagcaaattccatg
ccagtagttgcggaagaagcacccggagcatacaaagatgtggatcaggttgttaacgtc
tgtcacaaagcaggaatctcattattagtaggtaaaatgattccaattggtgtagcaaag
ggataa
DBGET
integrated database retrieval system
