KEGG   Methanobacterium lacus: Metbo_2185
Entry
Metbo_2185        CDS       T01437                                 
Name
(GenBank) exosome complex exonuclease 1
  KO
K11600  exosome complex component RRP41
Organism
mel  Methanobacterium lacus
Pathway
mel03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mel00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Metbo_2185
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mel03019]
    Metbo_2185
Messenger RNA biogenesis [BR:mel03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Metbo_2185
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     Metbo_2185
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: ADZ10400
UniProt: F0TCD3
LinkDB
Position
complement(2220694..2221425)
AA seq 243 aa
MIIIITNTNLSTGTETSGRADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVLAAVYG
PRELFVRRLMQPNKAVLRCKYNMAPFSVDDRKRPGPDRRSVEISKLASQALTPAVFLEKF
PRSTIDVFIEVIEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKSDGKVILDLSEV
EDKEGQADVPIAIMPRTGEITLLQMDGNLTEEEFEQALDLAINGCKIISEKQKAAIKNRY
GDE
NT seq 732 nt   +upstreamnt  +downstreamnt
gtgattatcattataaccaataccaatctaagcactggtactgaaaccagtggaagagcc
gataacagggcttttgacgagttaaggaagatgaagatagaggcaggagtccttgaaaga
gcggatggatcagcttatcttgaaatcggtggaaacaaagttctagctgctgtgtatggt
ccgagggaactgtttgtaagacgtttaatgcagccaaacaaggctgttttaaggtgtaag
tacaacatggcaccattttctgtggacgacagaaagaggccagggccagacaggagatct
gtagaaatctcaaaattagcttctcaagctctaactcccgcagtgttcctggaaaaattt
ccacgttcaaccatagatgttttcatagaagttatagaagctgaaggcggaacaagatgt
gctggaattacagcagcatcagttgccctggcagatgcaggaataccaatgagggacatg
gttgttgcctgtgcagcaggaaaatctgatggtaaggtcatactcgatctctctgaggtt
gaagacaaggaagggcaagcagatgttccaattgccatcatgccaagaacaggtgaaatc
acattactacagatggatggaaatctcacagaggaagaatttgaacaggcactggatctc
gcaattaacggttgtaaaattataagcgaaaaacagaaagcagccataaaaaacaggtat
ggtgatgaataa

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