Melaminivora suipulveris: C6568_00645
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Entry
C6568_00645 CDS
T05358
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mela
Melaminivora suipulveris
Pathway
mela03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mela00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C6568_00645 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mela03400
]
C6568_00645 (mfd)
Enzymes [BR:
mela01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C6568_00645 (mfd)
DNA repair and recombination proteins [BR:
mela03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C6568_00645 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AVO47927
UniProt:
A0A2R3Q8G9
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All DBs
Position
complement(130958..134431)
Genome browser
AA seq
1157 aa
AA seq
DB search
MHLPKLSPGKRFTLPRPAGSADALLLARLGQQQGAAKRLTAIVTADATDAQRLIDELVFF
APELRCALFPDWETLPYDSFSPHQDLISERLATLWRISQGDVDVVLVPATTALYRLAPQS
FLAAYTFHFKTGQKLDEAKLRAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPMGAGMPYR
VDLFDDEIDSIRTFDPDSQRSLYPVQEIRLLPGREFPMDDDARARFRQRWRELLEGDPTK
SRIYKDMGAGIATAGIEYYLPLFFEDTATVFDYLGGQATLVLHGDLEAAFQRFWQDTRDR
YRLIQGDPEHPALPPEALFLTAEQFYSRAKPHAQLALRSGVEDTPDNAWFQPLPPVAVVR
GAEDPLARLQAHIAMTDRRTLLLAESAGRRESLLDFLRASGLNPPAFDSLAEFQATPEER
VGIATGALAHGFSWVEDGIDFVTETELFAATGTTRRRRKQEQASDLEALIKDLSELKVGD
PVVHTQHGIGRYLGLVNMDVGQKNPDGTPALQEFLHLEYADKAALYVPVSQLQLIGRYTG
VSSDEAPLHKLGGSQWEKARRKAAEQVRDTAAELLNIYARRAARQGHAFRFPAQDYEEFA
NDFGFEETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRACFVAVAGGKQVAL
LAPTTLLAEQHYRTLVDRFSKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIVVGTHKLL
SESTKFKNLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTMGMALEGLRDLS
VIATAPQRRLAIKTFVRSESNGVIREAVLRELKRGGQVYFLHNEVETIENRRQALEQLLP
EARIAVAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPSANTIVISRADKFGLA
QLHQLRGRVGRSHHQAYAYLMVPDLEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRG
AGEVLGENQSGNMLEVGFQLYNEMLAEAVRSLKAGQEPDLLAPMQAATDINLHAPALLPD
DYCGDVHLRLSFYKKLATARTSEQIDALLEELVDRFGKLPPQAQTLIDVHRLRVLSQGYG
VLKVDAAPGVTTITFKPQPPVDPMAIIHLIQKNRHIKLAGNEKLRIERELPEATARAQMV
RDVLRSLGKPLSEAVPA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttcccaaactctcccccggaaaacgcttcaccctgccccgccccgcaggcagc
gccgacgccctgctgctggcccgcctggggcagcaacagggcgctgccaagcggctgacc
gccatcgtcaccgccgacgccaccgacgcgcagcgcctgatcgacgagctggtcttcttc
gcgcccgagctgcgctgcgcgctgttcccggattgggaaacgctgccctacgacagcttc
tcgccgcaccaggacctgatcagcgagcgcctggccacgctgtggcgcatctcgcagggc
gacgtggacgtggtgctggtgccggcgaccacggcgctatacaggctggcgccgcaatcg
tttctggcggcctacaccttccacttcaagaccgggcaaaagctcgacgaagccaaactg
cgcgcgcagctgacactggccggttaccagcacgtatcgcaggtggtgagccacggcgag
tacgcggtgcgcggcggcctgatcgacctgttccccatgggcgcgggcatgccctaccgg
gtggatttgttcgacgacgagatcgactccatccgcaccttcgaccccgacagccagcgc
agtctgtacccggtgcaggaaatccgcctgctgcccggccgcgaattccccatggacgac
gatgcgcgcgcgcgctttcgccagcgctggcgcgagctgctggagggcgaccccaccaaa
agccgcatctacaaggacatgggcgcaggcatcgccacggccggcatcgagtactacctg
ccgctgttcttcgaggacacggccacggtgttcgactacctgggcggccaggcgacgctg
gtgctgcacggtgatctggaggcggcctttcagcgcttttggcaggacacgcgcgatcgc
taccgcctgatccagggcgaccccgagcacccggcgctgccgcccgaggcgctgttcctc
accgccgagcagttctacagccgcgccaagccgcacgcgcaactggcgctgcgcagtggc
gtggaggacaccccggacaacgcctggttccagcccctgccgccggtggccgtggtgcgc
ggcgccgaagacccgctggcgcggctgcaagcgcacatcgccatgaccgaccggcgcacg
ctgctgctggccgagagtgccggccggcgcgagagcctgttggactttctgcgcgcctcg
ggcctgaaccctcccgccttcgacagcctggccgagttccaggccacgcccgaggagcgc
gtgggcatcgccaccggcgcgctggcgcacggcttttcctgggtcgaggacggcatcgac
ttcgtgaccgagaccgagctgttcgccgccaccggcaccacgcgtcggcgccgcaagcag
gagcaggccagcgacctggaggcgctgatcaaggacctgtcggagctcaaggtgggcgac
ccggtggtgcacacgcagcacggcatcggccgctacctgggcctggtcaacatggacgtg
gggcaaaagaaccccgacggcacgccagccctgcaggaattcctgcacctggaatatgcc
gacaaggccgcgctgtatgtgccggtgagccagctgcagctgatcgggcgctacaccggc
gtctccagcgacgaggcgccgctgcacaagctgggcggcagccagtgggagaaagcccgg
cgcaaggccgccgagcaagtgcgcgacaccgccgccgagctgctcaacatctacgctcgc
cgcgccgcgcgccagggccatgcgttccgcttcccggcgcaggactacgaggaattcgcc
aacgacttcggcttcgaggagacggccgaccaaaaggccgccatccacgccgtggtgcag
gacatgatcagcccgcagcccatggaccgcctggtctgcggcgacgtgggctttggcaag
accgaagtcgccctgcgcgcgtgcttcgtcgccgtggcgggcggcaagcaggtcgcgctg
ctggcgcccaccacgctgctggccgagcagcactaccgcacgctggtcgaccgcttctcc
aagtggccggtgaaggtggccgaggtctcgcgtttccgctcgggcaaggaaatcacggcc
gccgtcaaaggcattgccgatggcacggtggacatcgtcgtcggcacgcacaagctgctc
agcgaatccaccaagttcaagaacctgggcctgctcatcatcgacgaggagcaccgcttc
ggcgtgcgccataaggaggcgatgaaggcgctgcgcgccgaggtggacgtgctgacgctc
accgccacgcccatcccgcgcaccatgggcatggcgctggagggtttgcgcgacctgtcg
gtgatagcgacagcgccgcagcgccgcctggccatcaagaccttcgtgaggagcgagagc
aacggcgtgatccgcgaagcggtgctgcgcgagctcaagcgcggcgggcaggtctacttc
ctgcacaacgaggtcgaaaccatcgaaaaccgccgccaggcgctggagcagctgctgccc
gaggcgcgcatcgccgtcgcccacggccagatgcccgagcgcgagctggagcgcgtgatg
cgcgacttcgtggcgcagcgcttcaacgtgctgctgtgctcgaccatcatcgaaaccggc
atcgacgtgccctcggccaacaccatcgtcatcagccgcgccgacaagtttggcctggcg
caactgcaccagttgcgcgggcgcgtgggccgcagccaccaccaggcctacgcctatctg
atggtgccggacctggagggcctgaccaagcaggccgcgcagcgcctggacgccatccag
cagatggaggagctgggcagcggcttttacctggccatgcacgacctggagatccgcggc
gccggcgaggtgctgggcgagaaccagagcggcaacatgctggaagtgggttttcagctc
tacaacgagatgctggccgaggccgtgcgcagcctcaaggcaggccaggagcccgatctg
ctggcgcccatgcaggccgccaccgacatcaacctgcacgctccggccctcttgcccgac
gactattgcggcgacgtgcacctgcgcctgtcgttctacaaaaagctcgccacggccagg
accagcgagcagatcgacgcgctgctggaggaacttgtggaccgcttcggcaagctgccg
ccccaggcgcagacgctgatcgacgtgcaccgcctgcgtgtgctgagccagggctatggc
gtgctgaaggtcgacgcggcgccgggcgtcaccaccatcaccttcaagccgcagccgccg
gtggacccgatggccatcatccatctgatccagaagaacaggcacatcaagctggccggc
aacgaaaagctgcgcatcgagcgcgaactgcccgaagccaccgcgcgcgcgcagatggtg
cgcgatgtgctgcgcagcctgggcaagcctctgtccgaggccgttccggcttga
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