Methylomonas sp. LL1: IVG45_02270
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Entry
IVG45_02270 CDS
T07814
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mell
Methylomonas sp. LL1
Pathway
mell03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mell00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IVG45_02270 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mell03019
]
IVG45_02270 (pnp)
03016 Transfer RNA biogenesis [BR:
mell03016
]
IVG45_02270 (pnp)
Enzymes [BR:
mell01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IVG45_02270 (pnp)
Messenger RNA biogenesis [BR:
mell03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IVG45_02270 (pnp)
Transfer RNA biogenesis [BR:
mell03016
]
Prokaryotic type
tRNA degradation factors
IVG45_02270 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
OB_RRP5_4th
S1_RRP5
KH-I_KHDC4-BBP
KH_2
S1_2
DUF6160
Motif
Other DBs
NCBI-ProteinID:
QPK63826
LinkDB
All DBs
Position
complement(382996..385074)
Genome browser
AA seq
692 aa
AA seq
DB search
MNPIRKQFQYGDRLVTLETGEIARQANGAVMIDVDGTSLLVTVVGKKEAAGGDFFPLTVN
YQEKAFAAGKIPGGFFKREGRPSENETLISRLIDRPIRPLFPEGFTNEVQIIATVVSLNP
EVDTEIPALLGASAALAISGLPFNGPLGAACVGYKDGQYLLNPSLPALKESSLQLVVAGT
QHAVLMVESEADLLSEEVMLGAVLFGHEQMQVAIKAINELAAEVGTPALPWTPVETNSEL
KAAVIAEAEAGIKAAYQVAEKLVRQDTLSAIRSDVVEKLTADGLYNEKDIRNVIEHLEYD
IVRGAILNDRKRIDGRDLTTVRPISIRTGVLPRTHGSALFTRGETQAMVVATLGTERDAQ
IIDALSGEYKDPFMLHYNFPPYSVGETGFVGSPKRREIGHGRLAKRGVLAVLPNMAEFPY
VIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLIKEGDQFAVLSDILG
DEDHLGDMDFKVAGSENGVTALQMDIKIDGITAEIMKVALDQAKQGRLHILGEMNKALSA
TREEMSDFAPRIITFKIDPAKIREVIGKGGVTIRAITEQTGASIDLTDDGVVNVASVDRA
AGEEARRMIEEITAEVEVGKVYEGKVVRLMDFGAFVTILPGKDGLVHISQISDERVEKVS
DKLSEGDMVRVKVLEIDRQGRVRLSMKDTDSE
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctatcaggaaacaatttcagtacggcgatcgtctcgtcacgttagaaaccggt
gaaattgcccgccaagccaatggcgcggtaatgatcgatgtcgatggcacctctttactg
gtgactgttgttggcaaaaaagaagcggctggcggagattttttcccgctcaccgtcaac
tatcaggaaaaagcattcgcggccggcaagattcccggcggcttcttcaaacgcgaaggc
cgtcccagcgaaaacgaaaccctgatttcccgcctgatcgaccggcctatccgcccattg
tttcccgaaggcttcactaacgaagtacagattatcgctaccgtagtctcgctgaatcct
gaagtggacaccgagattcccgcactgttgggggcgtctgccgctctggccatatccggc
ctaccgttcaacggcccattgggcgcggcctgcgtcggttataaagacggccaatattta
ctgaacccttctttgcctgcattgaaggaatccagcttgcagctggtcgtcgccgggaca
caacacgcggtgttgatggtcgaatccgaagccgatttgctatcggaagaagtcatgttg
ggcgcggtcttgttcggccacgaacaaatgcaagtcgccatcaaggccattaacgaactg
gccgccgaagtcggcacccctgccctgccctggacgccggtcgaaaccaatagcgaacta
aaggccgccgttatcgccgaagccgaagccggcatcaaggccgcttaccaagtcgcggaa
aaattggtcagacaagatacactcagcgccatccgtagcgacgtggtcgaaaaattgacc
gccgacggcttgtacaacgaaaaagacatccgcaacgtcatcgaacatctggaatacgac
atcgttcgcggtgcgattttgaatgatcgtaaacgtatcgacggccgcgacctgaccacc
gtcagaccgatcagcatcagaaccggcgtcctgcccagaacccacggttccgcactgttc
acccgcggcgaaactcaagccatggtcgttgccacgctgggtaccgaacgcgatgcgcaa
atcatcgacgcgctgtccggcgaatacaaagacccgttcatgctgcactacaactttcct
ccgtacagcgtgggcgaaaccggcttcgtcggctcgccgaaacgccgcgaaatcggtcac
ggccgtctggcgaaacgcggcgtattggccgtactgcctaacatggcggaattcccttac
gtgatccgcgtggtttctgaaatcaccgaatccaacggctccagctccatggcttccgtc
tgcggcagcagcttggcgctgatggatgccggcgtgcctatcaaagcaccggttgccggc
atcgcgatgggcctgatcaaggaaggcgaccagttcgccgtgttgtccgacatcctgggt
gacgaagatcacctgggcgacatggactttaaagtggccggttccgaaaacggcgtcacc
gcgctgcaaatggacatcaagatcgacggcatcaccgccgaaatcatgaaagtcgcgctg
gaccaagccaaacaaggccgcctgcacatcctgggcgaaatgaacaaagccttgtccgca
acccgcgaagaaatgtccgatttcgcgccgcgcatcatcaccttcaaaatcgacccagcg
aaaatccgcgaagtcatcggcaagggcggcgtgacgatacgcgccattaccgaacaaacc
ggcgccagcatcgatttgaccgacgacggcgtggtcaatgtggcttccgtcgacagagcg
gcgggcgaagaagccagacgtatgatcgaggaaatcaccgccgaagtcgaagtgggtaaa
gtctacgaaggcaaagtggtgcgtttgatggacttcggcgcattcgtcaccatcctgcct
ggcaaggacggtttggtgcatatttcgcaaatctccgacgagcgcgttgagaaagtcagc
gacaagctgtccgaaggcgatatggttcgggttaaagtgctggaaattgaccgtcaaggg
cgggtaagattgagcatgaaggataccgatagcgagtaa
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