Methylomonas sp. LL1: IVG45_03350
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Entry
IVG45_03350 CDS
T07814
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mell
Methylomonas sp. LL1
Brite
KEGG Orthology (KO) [BR:
mell00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mell03016
]
IVG45_03350
Enzymes [BR:
mell01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IVG45_03350
Transfer RNA biogenesis [BR:
mell03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IVG45_03350
Prokaryotic type
tRNA splicing ligases
IVG45_03350
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Ortholog
Paralog
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GFIT
Motif
Pfam:
RtcB
DNA_ligase_IV
Tc-38
Motif
Other DBs
NCBI-ProteinID:
QPK64028
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All DBs
Position
609315..610511
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AA seq
398 aa
AA seq
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MPIKKVMTENHVPVKIWTDDVDDRSMEQLGNIAKLPFIHHHIAAMPDVHLGLGATIGSVI
ATHKAIIPAAVGVDIGCGMVAARLSITANDLDEKSLKKVFDQITRDVPVGRAQHADNRVL
VDAVQPFEPGLNRLTDRHPELLKSFGKFSKWMNQMGSLGGGNHFIEVCLDEFDQVWVMLH
SGSRGIGNAIADHFIKLARKDMERWMINLPDRDLAYFPEGTEHFDDYVEAVHWAQEYAMQ
NRQCMLDLVLSALARHLPAFEVTTEVVNCHHNYVAHEHHYGANVWVTRKGAIRAREGDLG
IVPGSMGAKSYIVRGKGNPESFNSSAHGAGRKMSRTAAEKAFTETDLVNQTVGVICRKDK
GVIDEIPGAYKDIDQVMANQNDLTEILHTLKQVVCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgccaataaagaaagtaatgacagaaaatcacgtgccagtcaaaatttggactgatgat
gtggatgatcgctcaatggaacaattgggcaacatcgcaaagttgccatttattcaccac
catatagcagccatgccggatgtccatttggggcttggtgcaacaatcggatcagtcatc
gctacccataaagccattatcccggccgcagtaggcgtcgatattggttgcggcatggtt
gccgccaggctgtcgattaccgcgaacgacctggatgaaaaatcactgaaaaaagttttc
gatcagattacccgcgatgtgccagtgggtcgtgcacaacatgcggacaatcgtgtgctg
gtcgatgccgtacaaccctttgaacctggtttaaatcgtcttaccgaccgtcacccggag
cttctaaaatcatttggcaagttttccaaatggatgaaccagatgggatcactcggtggt
ggcaatcatttcatcgaggtctgtctcgacgaattcgaccaagtgtgggtcatgctgcac
tccggcagtcggggtattggtaatgccattgccgatcacttcataaaactggcccgcaag
gatatggaacgctggatgatcaatttgcccgaccgggatttggcctatttcccggaaggt
accgagcattttgacgattacgtcgaggctgtgcattgggcgcaggaatatgcgatgcaa
aatcggcagtgtatgctggatttggtgctgtcggcgttggcgcgccatttaccggctttc
gaagtgaccactgaagtggttaattgccaccataactatgtagcccatgaacatcattat
ggtgccaatgtctgggtcactcgaaaaggtgcgattcgagcaagagaaggagatttgggc
attgtgcctggcagcatgggggctaagtcctatattgtccgtggaaaaggcaatccagaa
agctttaactccagtgcacacggtgctggccgtaaaatgagccggacggctgccgagaaa
gctttcactgagactgatctggttaatcaaacggtcggcgtcatttgtcgtaaagacaaa
ggcgttatcgatgaaatccctggcgcttataaagacatcgaccaggtcatggccaaccaa
aacgatttgacagagatcttgcataccctaaaacaagttgtctgcgttaagggataa
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