Methylomonas sp. LL1: IVG45_04650
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Entry
IVG45_04650 CDS
T07814
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mell
Methylomonas sp. LL1
Pathway
mell03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mell00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IVG45_04650 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mell03019
]
IVG45_04650 (rnr)
03016 Transfer RNA biogenesis [BR:
mell03016
]
IVG45_04650 (rnr)
Enzymes [BR:
mell01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IVG45_04650 (rnr)
Messenger RNA biogenesis [BR:
mell03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IVG45_04650 (rnr)
Transfer RNA biogenesis [BR:
mell03016
]
Prokaryotic type
tRNA degradation factors
IVG45_04650 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
LexA_DNA_bind
RNase_II_C_S1
CSD
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QPK64264
UniProt:
A0A7T0JPQ7
LinkDB
All DBs
Position
906438..908753
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AA seq
771 aa
AA seq
DB search
MTENHDQETDFKTLEDPYAQREAEKYENPIPSRELILQLIQQAGKPLRRQQIAQQFGLES
ADALEALRRRLRAMERDGQLVFNSRQKYSLGDGHNTIAGRVLGHPDGFGFLKPDDGSDDL
FLSPREMKPLMHNDRVTVRVSGIDRKGRREAAVVEIIERNTHQVVGRFFVEGRVACVVPD
NKKIIHEVLIANEDIGNAKKGQIVVAEIVQQPTAHCQPIGRVTEVLGMHMAPGMEIEMAI
RSYDLPNQWPDALLEEIKSLTPQVPEQAKQGREDIRHLPLVTIDGEDARDFDDAVYAQKT
AKGWKLLVAIADVSHYVRVNTALDAEAQNRSTSVYFPEKVIPMLPEILSNGLCSLNPEVD
RLCMVCEMLINEEGNVLRSRFFEAVMRSHARLTYTQVAKMLVEGDQKLAQKYAGLMPHLQ
NLYGLYKVMRHQRELRGAMDFDTQETRIVFGAGRKISEIVPVVRNDAHKLIEEFMITANT
AAAKFLNRKKMPRLLRIHDGPGAEKLLALKTFLSELGLHLGGGAQPTPLDYMHLLESVKE
RKDAHLIQTILLRSMSQAVYSPDTKGHFGLALDAYAHFTSPIRRYPDLLVHRAIRHCLAG
KKPAEFHYSHPDMVVLGEHCSAHERRADDATRDVVSWLKCEYMMDKIGEEFAGIISAVTG
FGFFVELQSIYVEGLVHIASLHNDYFEFDAGRHQLYGERSGVRYRLGDLVRVKVVRVNLD
DKKIDFELIASNKDTKKAGKNSASKSSRGKKSSDQPPAAKTKAKPRRRRKS
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaaaccacgatcaggaaactgattttaaaacgctcgaagatccttacgctcag
cgcgaggccgagaaatacgaaaacccgatccccagccgcgagctgatacttcagcttatc
cagcaagccggcaaacccctacgccgtcaacaaatagctcaacaattcggtctggaaagc
gccgatgccctggaggcattacgcagacgcctgcgggcgatggaacgagatgggcaatta
gtcttcaatagtcggcaaaaatacagtttgggcgatggccataatacgattgccggtcga
gtgttgggccatccggatggtttcggttttctaaagcccgacgacggcagtgacgattta
tttttgtcgccgcgcgaaatgaagcctttaatgcataacgatagggtgactgttcgggtc
tccggtatcgaccgcaagggccggcgcgaagctgcggtggtggaaataatcgaacgtaat
acgcatcaggtggtgggccggttttttgtcgaaggccgggtggcctgtgtggtacccgat
aacaaaaaaatcattcatgaagtgctgattgccaacgaagatattggcaatgccaaaaaa
ggccaaatcgtcgtggccgaaatcgttcagcaacccaccgcgcattgccaacctatcggc
cgagtcactgaagtgttgggcatgcacatggcacccggcatggaaatcgaaatggcgatt
cgttcctacgatttgcctaatcaatggcccgacgccttgctggaagaaatcaaatcccta
accccgcaagtgccggaacaagccaagcagggtagggaggacattcgccatttaccgttg
gtgacgatagacggcgaggatgcgcgcgatttcgacgatgcggtttatgcgcaaaaaacc
gccaagggttggaaattgctggtcgcgattgccgatgtctcgcattatgtgcgggtcaac
accgcgctggatgcggaagcgcaaaaccgtagcacctcggtctattttccggaaaaagtc
ataccgatgctgccggaaattttgtcgaacggtctatgctcgttgaatccggaagtcgat
cgcttgtgcatggtctgcgaaatgctaattaatgaagaaggcaatgtcttgcgttctcgg
ttttttgaagccgtgatgcgctcgcatgcccggctgacctatacccaggtagccaagatg
ctggtggagggcgatcaaaaactggctcaaaaatatgccgggttgatgccgcacttgcag
aatttgtatggtttgtacaaagtcatgcgccaccagcgtgaattgcgtggggccatggat
tttgatacccaggaaacccgcatcgtatttggcgccggacgcaagatctctgaaatcgtg
ccagtggtgcgtaacgacgcgcacaaattgatcgaagaattcatgatcaccgccaatacg
gcggcggccaagtttttaaaccgcaagaaaatgccgcgcttattacggatacacgatggt
ccgggcgcggaaaaactgctggccctgaaaacctttctgagcgaactcggtttacatctc
ggtggcggcgcccagcccacgcctctggactacatgcatttactggagtcggtcaaagag
cgtaaagacgctcatctgattcaaaccattttgttgcgctcgatgtcgcaagcggtttat
agccccgataccaagggccatttcggtctggcgctggatgcctatgcgcactttacctcg
ccgattcgacgctatccggatttgttggtgcatagggcaattcggcattgcttggccggc
aaaaaaccggccgaatttcactacagtcatcccgatatggtggtgctgggtgagcattgt
tccgcccacgagcgccgcgccgatgatgctacccgcgatgtggtgagctggctgaaatgc
gagtatatgatggacaaaatcggcgaagagtttgccggcatcatttccgccgtcaccggt
ttcggtttttttgtcgagctgcaatcgatttatgtcgaaggcttggtgcacatagcttcc
ttgcataacgattatttcgaattcgacgccggcaggcatcagctatacggcgagcgcagc
ggtgtacgctatcgtttgggcgatttggtgcgggtaaaagtggtgcgggtaaatctggac
gacaaaaaaatcgattttgaattgatagcctcgaataaagacaccaaaaaagccggaaaa
aattcggcaagcaagtcgtcgcgaggcaaaaaatcctcggatcagccgccggccgcaaaa
accaaagccaagcctagaaggcgccgtaaatcatga
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