Methylomonas sp. LL1: IVG45_05045
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Entry
IVG45_05045 CDS
T07814
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mell
Methylomonas sp. LL1
Pathway
mell03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mell00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IVG45_05045 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mell03400
]
IVG45_05045 (mfd)
Enzymes [BR:
mell01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IVG45_05045 (mfd)
DNA repair and recombination proteins [BR:
mell03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IVG45_05045 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_30
Glyco_tran_WecG
ERCC3_RAD25_C
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
QPK64333
UniProt:
A0A7T0NYJ8
LinkDB
All DBs
Position
complement(1002658..1006122)
Genome browser
AA seq
1154 aa
AA seq
DB search
MPSFSLINAAVPKDTDAPLYWSGLTGCGDSLALASAIAQEKRLVVIVTPDTQTALRLEHE
LAFFLDNAFPILQFPDWETLPYDVFSPLPEIISERIRTLALLPETKRGALIVPISTLMQR
LAPREHILAHSFAIEVGGGLNLELTRARLEAVGYQCVSQVYQHAEFAVRGSIIDLFPMGS
KQPYRIELFDDDVESIRGFDPDTQMSREKMTKVELFPAREFPFTDDAIKRFRQAFREQFP
NASAKNNLYLDVSKQIAPAGIEYYLPLFVERTESLFAYLPKTALFVLPAAFTDNAVRFYN
EADERYQQRKYDVDRPLLPPERLFLSAEEIQCHTDSFNRIVLDNLTPVPFPSGDGQDFHC
KSLPEVAIDSRLKEPAQHLRQFIEGFDGKVLFVAETAGHREGLIDKLKSVKLAAKQVQSW
PEFLQSDHSPCIVVAPMDQGLWLDGPKIAIITESQLSGEKVQQRRRRQKSAARALENIFN
NLDELTVGSPVVHQEHGVGRYLGLQILNVGGIDAEFLMLEYANHDKIYVPVSSLHLIGRY
SGVSAENAPLHRLGTDQWSKAKKKAMERARDVAAELLDIHAKRAARQGFAFNVDNSDYDA
FAAAFPFEETPDQLNAIDAILQDMATTQPMDRVVCGDVGFGKTEVAMRAAFVAVQSGKQV
AVLVPTTLLAQQHYQNFRDRFADWPVRVEVTSRFVTAKQQKTIADELAEGKVDIVIGTHK
LLSKDMQYKSLGLVIIDEEHRFGVTQKEHFKKLRYELDLLTLTATPIPRTLNMAMAGLRD
ISIIATPPPNRHAIKTFVTEWIDSQIQEACQREIKRGGQVFFLHNDVKTMDKMARELEAL
VPEARIQIAHGQMAERELEQIMLDFYHQRFNLLIATTIIESGIDIPSANTIVINRADKLG
LAQLHQLRGRVGRSHHRAYAYCIVPPKSLMTKDAIKRLEAFETSGELGAGFMLSSHDMEI
RGAGELLGDEQSGQIQEIGFTLYTELLERAVKALKSGKQPELDAPLETGPEVDLQIAALI
PEDYLPDIHARLVLYKRIASTETEDDLRKLKIEMIDRFGLLPDQVRALFAITELKQQAAH
LGIKKIEAYSTGGRIVFSSSPQIDTGELITMIQSQSRVYKFDGADKLRFTYTFKDMEDKV
VFLEKLLLRLGPKS
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcattctcgctgattaacgccgctgtccctaaagacaccgacgctccgttgtac
tggtccggattaaccggctgtggcgattcgctggcgctggccagcgcgattgcccaggaa
aaacgtttggtcgtcatcgtcacgccggacacccagaccgcattacgcctggaacacgag
ctggcgtttttcctggacaacgcgtttccgattctacagtttcccgactgggaaaccctg
ccctacgacgtgttttcgcccttgccggaaattatctcggaacgcatccgtaccctggca
ttgctgcccgagaccaagcgcggagcgctgattgtaccgatttcgaccctgatgcagcga
ctggcgccacgcgagcatatcctggcgcacagcttcgcgatcgaagtcggcggcggcttg
aatctggaactaacccgcgccaggctggaagcggtcggctaccaatgcgtgtcgcaagtc
tatcagcacgccgaattcgcggtgcgcggctccatcatcgatttgtttccgatgggcagc
aagcaaccttaccggatcgaattgttcgacgatgacgtggaatcgatacgcggttttgac
cccgacacacaaatgtcgcgggaaaagatgactaaggtcgagctgtttccggcccgcgag
tttccgtttaccgacgatgcgatcaaacgtttccgccaagccttccgcgaacaatttcct
aacgcttccgccaaaaacaatctgtacctggacgtttccaagcaaatcgctccggccggt
atcgaatattatctgccgctgtttgtcgagcgcaccgaatcgctgttcgcctatttgccc
aagaccgccttgttcgtgttgccggccgcttttaccgacaacgccgtgcgtttttacaac
gaggccgacgagcgttatcaacagcgcaaatacgatgtagaccgccccctgctaccaccc
gagcgcttgtttttgtcggccgaggaaatccagtgccacacggatagtttcaaccgcatc
gtgttggataacctcactccagtccctttcccaagtggagatggacaagattttcattgc
aaaagcctgcctgaggtcgcaatcgacagccgactaaaagaaccggcacagcatttacgc
cagtttatagagggattcgacggcaaagtcctgttcgtcgccgaaaccgccggccaccgt
gaaggcctgatcgacaaactgaaaagcgtcaaactcgccgccaaacaagtccagagctgg
cctgaatttctgcaaagcgatcattcgccgtgcatcgtcgtggcaccgatggaccaagga
ctgtggctagacggacccaagatcgcgattatcaccgaaagccaactcagcggcgaaaaa
gttcagcaacgccgccggcgccagaaatccgcggcccgggcgctggaaaatatcttcaac
aacctcgacgaactgaccgtcggttcgccggtggtacatcaagaacacggcgtcggccgc
tatctgggcttgcaaattctgaacgtaggcggcatagacgccgagtttttaatgctggaa
tatgccaaccacgacaagatttacgtgccggtgtcgtcgctgcatttgatcggccgttac
agtggcgtcagtgccgaaaacgcaccattacaccgcctcggcaccgaccagtggagtaag
gccaagaaaaaggccatggaacgggcgcgcgacgtcgccgccgaattgctggacatccac
gctaaacgcgccgctcgccagggttttgccttcaatgtcgacaacagcgactacgacgct
tttgccgccgccttcccgttcgaggaaacccctgaccagctcaacgccatcgacgccata
ttgcaagacatggccaccactcagcctatggaccgcgtcgtttgcggcgacgtcggtttc
ggcaagaccgaagtggcgatgcgcgccgcctttgtcgcggtgcagagcggcaaacaggtg
gcggtgctggtgccgaccaccctgctcgctcaacagcattaccagaacttccgcgaccgc
ttcgccgactggccggtgcgcgtggaagtcacctcgcgcttcgtcaccgccaagcagcaa
aaaaccatcgccgacgagctggccgaaggcaaggtcgacatcgtcatcggcacccacaaa
ctgctgtcgaaagacatgcaatataaatcattgggcctggtgatcatcgacgaggaacac
cgcttcggcgtcacccaaaaggaacacttcaagaaactgcgttacgagttggatttactg
acgctaaccgcgacaccgattccgcgcaccttgaacatggcgatggccggcctgcgcgac
atctccatcatcgccacgccgccgccgaaccgccacgctatcaagactttcgtcaccgaa
tggatagactcgcaaatccaggaagcctgccaacgcgaaatcaagcgcggcggccaggta
tttttcctgcacaacgacgtcaagaccatggacaagatggcccgcgagttggaggccttg
gtgccggaggcccggattcagattgctcacggccagatggcggagcgcgagttggagcag
atcatgctggatttctatcaccagcgcttcaacctgctgattgctaccaccatcatcgaa
agcggcatcgacattcccagcgccaacaccatcgtcatcaaccgcgccgacaaactgggt
ctggcgcaattacaccagttgcgcggccgggtcggccgttcgcaccatagagcttatgct
tactgcatcgtgccgccgaaatccttgatgaccaaggacgccatcaagcgcctggaagcc
ttcgaaacctccggcgaactcggcgcaggtttcatgctgtcctcgcacgacatggaaatc
cgcggcgcgggggagttgctgggcgacgaacaaagcgggcagattcaggaaatcggcttt
accctatataccgagttgctggaacgggccgtgaaagccttgaaatccggtaagcagccg
gagctcgatgcgccgctggagaccggcccggaagtcgatctacaaatcgcggccttgatt
ccggaagattatttgccggacatccacgcccgcctggtgctgtacaaacgcatcgccagc
accgaaaccgaggacgatttgcgcaagctgaaaatcgagatgatcgatcgcttcggtctg
ttgccggatcaagtcagggctctgttcgccatcaccgaactcaaacagcaagccgcgcat
ctgggtatcaaaaaaatcgaggcatacagcaccggtggtcgcatcgtcttcagttccagt
cctcaaatcgataccggcgagttaatcacgatgattcaaagtcagtcgcgggtctataaa
ttcgacggcgcggataaattaaggtttacctacacgtttaaggatatggaggataaggtg
gtgtttctggaaaagttgttgttacgattagggccgaaatcataa
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