Methylomonas sp. LL1: IVG45_09060
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Entry
IVG45_09060 CDS
T07814
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mell
Methylomonas sp. LL1
Pathway
mell03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mell00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IVG45_09060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mell03019
]
IVG45_09060
03009 Ribosome biogenesis [BR:
mell03009
]
IVG45_09060
Enzymes [BR:
mell01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IVG45_09060
Messenger RNA biogenesis [BR:
mell03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IVG45_09060
Ribosome biogenesis [BR:
mell03009
]
Prokaryotic type
rRNA processing factors
IVG45_09060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QPK65063
UniProt:
A0A7T0JRE2
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All DBs
Position
1945668..1947839
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AA seq
723 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIITRVEPSLEAAFVNY
GSEKHGFLPFKEIAPEYRNSGESEEKTNKIGIREGQEIVVQIEKEERGNKGAALTTYISL
AGTYLVLMPNNPKAGGISRRIEGENRSELRETMAGLEIPDSMGLIIRTAGSDKNVEELQW
DLNYLLQLWEAIDRSSSEQTAPFLIFQESNVIIRALRDHLRGDIDEILIDQEGAFKLVHN
FLKQVMPHNLQKAKLYQDSVPLFSRYQIETQIEMAYKREVSLPSGGSIVIDHTEALTSID
INSARATKGSDIEETALNTNLEASDEIARQLRLRDLGGLFVIDFIDMMSNKNQREVENRL
RDALKIDRARIQTGRISRFGLMEMSRQRLRPSLGDSTQLTCPRCKGQGTIRNVESVTLAV
LRLIEEEAMKKGTERVIAHLPIDCATFLLNEKRSAIQELETRLKVSIVVLPSKHIETPAY
DIERIKSLEGMEDKPSHLQIKEDDITVPDFAKQTGPKAERAAVKEFLPDAPAPVQNKKTS
TSLIQRFWQRLIGQSKVAEIAESSTKTSEGEGKSKSSARNNRRDRDRPSGGRNNPRRNNK
RGFNPAQPVEAGANAEDNSSTAIESVADTSDNAASKTSPTGDRPARRGRNRRRNPRNAGE
RRPEQSQGESDSQERISSPVNSAGDDQPRPYAADFAERKQRSSAEQQESRPSESHQPTSA
AED
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaacgccacgcagcccgaagagctgcgagtggcattggtagat
ggtcaaaaactgtatgattttgacatcgaagtcccttcaaaagaacaaaaaaaatccaac
atttacaaaggcatcatcaccagggtagaacccagtctcgaagcagccttcgtcaattac
ggctccgaaaaacacggttttctgccgttcaaggaaatcgcgccggaataccgaaacagc
ggcgaatccgaagaaaaaaccaataaaatcggcatccgcgaaggccaggaaatcgtcgtt
cagatcgaaaaagaagaacgcggcaacaaaggcgccgccctcaccacctacatcagcttg
gccggcacctatctggtgttgatgcccaacaatcccaaagccggcggcatttccagacgc
atagaaggcgagaatcgcagcgaattacgcgaaaccatggccggcctggaaatcccggac
agcatgggcttaatcattcgcaccgccggttccgacaaaaacgtcgaggagctgcagtgg
gacttgaactacctgctgcaactctgggaagccatcgaccgctccagcagcgagcaaaca
gcaccgttcctgatctttcaggaaagcaacgtgattatccgcgccttgcgcgaccatttg
cgcggcgacatcgacgaaatcctgatcgaccaggaaggcgccttcaaactggtgcacaac
ttcctcaaacaggtgatgccgcataacctgcaaaaagccaagctgtatcaggacagcgta
ccgctgttcagccgctaccagatcgaaacccagatcgaaatggcctacaagcgcgaagtg
tcgctgccgtccggcggctccatcgtcattgatcacaccgaagccttgacctcgatcgat
attaactcggcccgcgccaccaagggcagcgacattgaggaaaccgcgctgaacaccaac
ctggaagcatccgacgaaatcgcccgccaactgcgtttgcgcgacttgggcggattgttt
gtgatcgatttcatcgacatgatgtcgaataaaaatcagcgcgaagtcgaaaaccgcctg
cgcgacgccttgaaaatcgaccgagcgcgcatccaaaccggtcgtatctcgcgtttcggt
ttgatggaaatgtccagacaacggctgcgtccttcgctgggcgactcgacccaactgacc
tgcccacgctgcaagggtcaaggcacgatccgcaacgtcgaatcggtcacgctggccgta
ctacgcctgatcgaagaggaagcgatgaaaaaaggcaccgagcgcgtcatcgcccacctg
cccatcgactgcgccacctttttgctgaacgaaaaacgctcggccatccaggaactggaa
acccggctgaaagtcagcatcgtggtattgcccagcaaacacatcgaaacaccggcttac
gacatcgagcgcatcaaatccctggaaggcatggaagataaacccagccacctgcaaatc
aaggaagacgacatcactgtacccgactttgccaaacaaaccggccccaaagccgagcgc
gcggcggtgaaggaatttttaccggacgcccccgccccggtacaaaacaaaaagacctca
accagcctgatacaacgtttctggcaacgcctgatcggccaaagcaaggtagcggaaatt
gcggaatcttccactaaaaccagcgaaggcgaaggcaagtccaaatcatccgcccgcaac
aatcgccgcgaccgagatcgtccaagcggaggccgtaacaacccgcgcaggaacaacaaa
cgcggcttcaatcccgcccaaccggttgaagccggcgccaacgccgaagacaacagctcg
accgcaatcgaatcggtggcggataccagcgacaacgccgcaagcaaaacctcgccaacc
ggtgaccgtcccgctcgcagaggccgcaatcgccgccgtaatccacgcaacgccggcgaa
agaagacccgagcaaagccagggggaatccgatagccaagagcgcatctcctcgccggta
aacagcgccggcgacgatcaaccacgtccctatgcggcggactttgccgaacgtaagcaa
cgttccagcgcggaacagcaagaatccagacccagcgaaagtcatcaaccgacatccgct
gccgaagactaa
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