Methylomonas sp. LL1: IVG45_20260
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Entry
IVG45_20260 CDS
T07814
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mell
Methylomonas sp. LL1
Pathway
mell02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mell00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IVG45_20260 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mell03021
]
IVG45_20260 (rpoD)
Transcription machinery [BR:
mell03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IVG45_20260 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
QPK63111
UniProt:
A0A7T0JNF3
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All DBs
Position
4316099..4317913
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AA seq
604 aa
AA seq
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MNQEQQQSQLKQLIAKGKAQGYLTYAEVNDHLPSDIIDPEQIEDIIGMINDMGIQVYEVA
PDDDDSLIASDTVVSADDEEEVAEVAALASVDSEFGRTTDPVRLYMREMGSVELLTREQE
LKIAKRIEEGQRQVVSAIARSGFIVESFIETFAGVADEESSTRLGDLVQGFVDYTDVDEV
AVEEVEIEAPAEEADEDEVKAIDYNEVKDKVDLVKKALKTAMAAVKKHGYGHDKSEKAFD
ALSDVFSEFKWTPQYLKKMTSVADDLIAAIREQEKQVMDVCVKKAKVPRREFINVFTENE
TQLNWLEQFIQDNPKYADALTANQDKIKQAQQRLADIETQHGLSIAHLKNICRNISLGEA
KARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY
ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQILQELGREATPEELAERMEMP
EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSKMLSPVESATIAGLRESTQNVLAG
LTAREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRCF
LDGE
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaacaacagcaatctcaactaaaacaactgatcgcaaaaggcaaggcgcaa
gggtatttaacctatgcggaggttaacgaccatctgccaagcgatatcatcgatcccgaa
cagattgaagatattattggcatgatcaacgacatgggtattcaagtctatgaagttgcc
cccgatgacgacgattccttgattgcctccgatacggtggtttcggccgatgacgaggaa
gaggttgccgaggttgcggcattggcttcggtcgacagcgaatttggccgtaccacggat
cctgtgcgcctgtacatgcgagaaatggggtcggttgagctgttgactcgcgagcaggag
ttgaaaatcgctaagcgtatcgaagaaggccagcgccaagttgtgagtgccatcgcgcgt
tccggtttcattgtcgagtcgtttatcgaaacatttgccggcgtggccgatgaggaatca
agtactcgtctgggtgatctggttcaggggtttgtcgattacaccgatgtcgatgaggtg
gctgtcgaagaggttgagatcgaagctccggcggaagaagcggacgaagacgaagtcaag
gccatcgattacaacgaggttaaagacaaagtcgatttggtgaaaaaagcgttaaagact
gctatggcggccgtcaaaaaacacggctatgggcatgataaatcagaaaaagcttttgat
gctcttagtgatgtgttttccgaattcaaatggacgccgcagtatcttaaaaagatgacc
tccgttgcggacgatctgattgccgctattcgcgagcaggaaaagcaggttatggatgta
tgcgttaaaaaagccaaggttccgcgccgcgaatttataaacgttttcaccgaaaacgaa
acgcagttgaactggctggagcaatttatccaggataatcctaaatatgccgatgcgttg
actgccaatcaggataaaattaagcaggctcagcaaaggctggcggatattgaaacccag
catggcttgagcatcgctcatctgaaaaatatttgccgcaacatctcgttgggtgaagcc
aaggctaggcgtgccaagaaggaaatgatcgaggccaacctgcggttggtgatctcaatt
gccaagaaatacaccaatcgtggtttgcagttcctcgatctgatccaggagggcaacatc
ggtttgatgaaggcggtcgacaaattcgaataccgtaggggttataagttttcgacttat
gcaacctggtggatacgtcaggccattacccgttcgattgccgatcaagccaggaccatt
cgcattccggtgcatatgatcgaaaccatcaacaagctgaatcgtgtctccagacagatt
ttgcaggagcttggccgcgaagcgactccggaagaattggccgagcgcatggaaatgccg
gaagacaaaattcgcaaggttctgaagattgccaaggaaccgatttcgatggaaacgccg
attggcgacgacgaagattcgcatttgggtgattttatcgaagattccaagatgctatcg
ccggttgaatctgctacaatcgccggccttcgcgaatcgacgcagaatgttttggcgggt
ttgactgcgcgagaagcaaaagtgttacgcatgcgttttggtatcaatatgaataccgac
catactcttgaagaggtgggtaagcaatttgacgttacccgggaaaggatacgtcagatc
gaagccaaggcgctgagaaaattgcggcatccatcaagatcggagcaattgcgctgcttc
ctggatggcgagtaa
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