Methylomonas sp. LL1: IVG45_21095
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Entry
IVG45_21095 CDS
T07814
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mell
Methylomonas sp. LL1
Pathway
mell03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mell00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IVG45_21095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mell03019
]
IVG45_21095
03009 Ribosome biogenesis [BR:
mell03009
]
IVG45_21095
Enzymes [BR:
mell01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IVG45_21095
Messenger RNA biogenesis [BR:
mell03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IVG45_21095
Ribosome biogenesis [BR:
mell03009
]
Prokaryotic type
rRNA helicases
IVG45_21095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
HEM4
GMT-wHTH
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QPK63270
UniProt:
A0A7T0NYG7
LinkDB
All DBs
Position
complement(4506884..4508617)
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AA seq
577 aa
AA seq
DB search
MSDTPTLTPSFKDLALSEPVLKALQNIGYETPSPIQAQIIPFVMAGRDVLGQAQTGTGKT
AAFAMPILTRLDIKQKDPQALVLAPTRELAIQVAEAFQSYAAHIKGFHVLPIYGGQDYSV
QLRQLNRGAHVVVGTPGRVMDHMRRGTLKLDQLKTLVLDEADEMLRMGFIDDVEWILEQT
PSTRQTALFSATMPNEIRKIAQQYLNNPEQVTIKVKTTTAANIRQRYWFVSGLHKMDALT
RILEAENFDGMIIFVRTKTATIEVAEKLEARGFSASAINGDMSQALRERAIENLKNGKLD
ILIATDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFVSPREKRLL
ANIEQATKQKVEEMQLPSTEFINNARVNRFKQRITDTLAAEELSFYNQLINQYQVEHDVP
ATDIAAALAKLLQGDTPLIMKEVAKKPRKDADDKSRGKDHDRDRGPKRERGRASSVEMEL
FRIEVGHSDGVKPGNIVGAIANETGIDGDHIARIKIEENYSTVELPAGMPKDLFQALKKV
RVAGKALDISKFDPDLVKKAKSKKRVGSTSKRGKSKE
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatacccccaccctcacgccttccttcaaggatttagcattatccgaaccggtt
ttaaaagccctgcaaaacatcggttacgaaactccctcgccgattcaggctcagattatc
cctttcgtaatggccggccgcgatgtgctgggccaggcccaaaccggtaccggtaaaacc
gcggcctttgccatgccgatattgactcgcctcgacattaaacaaaaagatccgcaagcc
ctggtattggctcccactcgcgaattggcgatacaagtagccgaagcctttcaaagctat
gccgcccacattaaaggctttcatgtattacctatttacggtgggcaggattacagcgtt
caactacgccaactcaatcgcggcgcccatgtggtggtcggcacgccgggccgagtcatg
gaccatatgcgtcgcggcaccttgaagctggatcaactcaaaaccctggtactggacgaa
gccgacgaaatgctgcgcatgggctttatcgatgacgtcgaatggatcctggaacaaacg
ccctcgactcgccaaaccgcgctgttttcggcgaccatgccaaacgaaatccgcaagatt
gctcaacaatatctgaacaatcccgaacaagtcacgatcaaggtcaaaaccaccacggcg
gccaatatccgccaacgttactggtttgtcagcggcttgcacaaaatggacgccctaact
cggattctggaagccgagaacttcgatggcatgatcattttcgttagaaccaaaaccgcc
acgatcgaagtcgccgagaaactggaagcccgcggattttccgcttcggcgattaacggt
gacatgtcgcaagccttgcgggaacgcgcgattgaaaacctgaaaaacggtaagctggat
atcttgatcgccaccgacgtcgccgcccgcggcctggatgtcgaccgcattacccatgtc
gtcaactacgacattccctacgataccgaatcctatgtacaccgcatcggccgtaccggc
cgcgccggccgtaccggcgatgcgattttattcgtctcgccacgcgagaaacgcctgctg
gccaacattgaacaagccaccaagcaaaaagtcgaggaaatgcagttaccatcgaccgag
ttcatcaacaacgcccgcgtcaaccgcttcaaacaacggataaccgacaccttggccgcc
gaggaactgagcttttacaaccaattgatcaatcagtaccaggtcgaacatgacgtaccg
gcgactgacattgccgccgcactggctaagttgctgcaaggcgacacgccgttaataatg
aaagaagtcgctaaaaaaccccgtaaagatgcggatgacaaatcacgcggcaaggaccat
gaccgcgatagaggcccaaaacgcgaaagaggccgggccagctcggtggaaatggaacta
ttccggatcgaagtcggccacagtgacggcgtcaaacccggcaacatcgtcggtgccatc
gccaacgaaacaggcatcgacggcgaccacatcgcccgcatcaaaatcgaggaaaattac
agcaccgtggaattaccggccggcatgcccaaggatctattccaggctttgaaaaaagtc
cgcgtggccggtaaagccctggacatctctaaatttgatcccgacttagtgaaaaaagcc
aaaagcaaaaaacgcgtgggctcaacctccaagcgcggcaaaagcaaggaataa
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