Methanococcoides orientis: J7W08_01835
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Entry
J7W08_01835 CDS
T08012
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
melo
Methanococcoides orientis
Pathway
melo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
melo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
J7W08_01835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
melo03019
]
J7W08_01835
03009 Ribosome biogenesis [BR:
melo03009
]
J7W08_01835
04131 Membrane trafficking [BR:
melo04131
]
J7W08_01835
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
melo04147
]
J7W08_01835
Messenger RNA biogenesis [BR:
melo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
J7W08_01835
Ribosome biogenesis [BR:
melo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
J7W08_01835
Membrane trafficking [BR:
melo04131
]
SNARE
SNARE associated proteins
Others
J7W08_01835
Autophagy
Aggrephagy
Other aggrephagy associated proteins
J7W08_01835
Exosome [BR:
melo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
J7W08_01835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
AAA_2
AAA_22
TIP49
AAA_33
CDC48_2
AAA_14
nSTAND3
NPHP3_N
NACHT
RNA_helicase
AAA_28
Mg_chelatase
IstB_IS21
Parvo_NS1
Sigma54_activat
AAA_18
ABC_tran
AAA_24
AAA_7
AAA_lid_PRS2_C
AAA_17
ORC-CDC6-like
TsaE
NB-ARC
Zeta_toxin
AAA_11
AAA_3
DUF815
AAA_25
Vps4_C
AAA_19
SLFN-g3_helicase
Sigma54_activ_2
AAA_30
bpMoxR
KAP_NTPase
Motif
Other DBs
NCBI-ProteinID:
UGV41077
LinkDB
All DBs
Position
complement(332874..335168)
Genome browser
AA seq
764 aa
AA seq
DB search
MPTIVEKGNSNGDSIKLKVAEATQEDVGKGIVRIDPVHREKIGIGEYGVLEIEGNRTTSA
LAINTNPADSGLDIIRMDGLIRANAKISIGDYVEVRKADWKEAINVSLAPVSKGMHISAS
SNILASVFRNRTVSKGDFISTTHFRRSKESPARSMMLEDMFSDIFDLSFGLGEIKMQVVS
TSPKGIVKITEMTELQLLPEAVELPPEQSIPTVMYEDLGGIKPAISKVREMVELPLKHPE
LFDRLGIEPPRGVLLHGPPGTGKTMLARAVANESDAYFVSINGPEIMSKYYGESEHQIRE
IFDDAEKNAPAIIFLDEIDSIAPKRAEVTGEVERRVVSQLLSLMDGLKERKNVIVIGATN
RPEALDMALRRPGRFDREIVLHVPDQDGRLEIFQIHTRGMPLADDVDLKTLAETSYGFVG
ADIAALCREAAMSSLRKVLPQINLEEEHIPDEILEKLSVTLEDFKVAQKDVEPSAMREIM
IETPNVGWDDVGGLEDVKELLKEAVEWPLKNPESFQRIGVEAPKGVLLYGPPGTGKTMLA
KAIAHESNANFITSKGSDLLSKWYGESEKHISEMFARARQVAPSIVFLDELDALAPIRGG
AMGEPQVTERIVNQLLSELDGLEELHGVVIVGATNRPDIIDPALLRPGRFDELILVPVPD
LPTRRKIFAVHTKKMSLASDVNIEELVTSTDKYTGADVAAVCKKAGRFALREDLMAKEVS
QKHFLKAIAETGTSVTSDTMKYYEDLKGDLKTKRSREIESPVYG
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgccaacaattgtagagaaaggcaattcgaacggggatagcatcaaactgaaggtagct
gaggcaactcaggaagatgttggaaaaggcatcgtgcgcatcgatccggtgcacagagag
aagattggtattggagaatacggagttctagagatcgagggaaatcgtacaacatctgca
cttgcgataaacactaatcctgcagattccgggcttgatattatccgaatggacgggctt
atacgtgcaaacgcgaagatcagcatcggggattatgtagaggtcagaaaagcagactgg
aaggaagcaattaatgtaagtctcgcacctgtgagcaaagggatgcacatttcagcctca
agtaacatccttgcatccgttttcaggaacaggacagtctcaaaaggggatttcatctct
accacacatttcagaagatcaaaggaaagccctgcacgaagcatgatgcttgaggacatg
ttcagtgacatttttgacctatcgttcggtctgggcgagatcaagatgcaggtggtctca
acatccccaaagggtattgtcaagatcactgaaatgacagaacttcaattactacccgaa
gcggtagagctcccgccggagcagtcgatacctactgtaatgtatgaagaccttggaggt
atcaagccagctatttccaaagtaagggaaatggtcgagttaccgttgaagcacccggag
ctatttgaccggctgggcatagaaccgccaaggggtgtgctgctacatggcccgcccggg
accggcaagaccatgctggcaagagcggttgctaatgaatcagatgcttatttcgtatcc
atcaacggtcccgagataatgtcaaaatactatggtgaatccgagcatcagatacgtgag
atattcgatgatgccgagaagaatgcaccagccatcatattccttgatgagatcgattcc
atcgcaccgaagagagcagaagttaccggggaggtcgaaaggagggtcgtctcacagctt
ctttcattgatggacggcctgaaggaacgcaagaatgtcatagttattggtgcaaccaac
cgtccggaagctttagacatggcactgcgccgtcccggaaggttcgatcgtgagatagta
ctacatgtaccggatcaggacggtcggctggaaatattccagatacacacccgcggaatg
ccacttgcagatgacgtggatcttaagacactggctgaaaccagttatggttttgtggga
gcggacattgcagcactttgtcgtgaagcggcaatgagctcgctcaggaaggtcctcccc
cagatcaatcttgaagaagaacacatcccggacgagatccttgaaaagctgagcgtcacc
ttagaagatttcaaagtagcacagaaggatgtggaaccctctgcaatgcgcgagatcatg
atcgagacgccaaatgtgggatgggacgatgttggaggactggaagatgttaaggaactt
ctcaaggaagctgtagaatggcctcttaaaaatccggaatcattccagcgtatcggagtg
gaagctccaaagggagtattgctctatggaccacctggaaccggtaagaccatgctggca
aaagccatcgcacatgaatccaatgctaattttataacctcaaagggaagtgacctgctt
tcaaaatggtatggagaatctgaaaagcacatctcagaaatgttcgcccgtgcacgtcag
gtagcaccatccatcgttttccttgatgagcttgatgcgcttgcacccatacgcggagga
gcaatgggagaaccacaggttactgaacgtatcgtgaaccaattactctcggaacttgac
ggtcttgaagaactccatggtgttgtgatcgtaggtgctacgaacagacctgacatcatc
gatccggcacttctccgcccgggaagatttgatgagctcatacttgtacctgtgcctgac
ctgcccacccggcgtaagatctttgcggtccacactaaaaagatgtcacttgcaagtgat
gtcaatatagaggaactcgtgacttcaacagacaaatacaccggagccgatgttgctgcg
gtctgtaaaaaagcaggacgctttgcccttcgtgaagacctcatggcaaaagaggtctca
caaaaacacttcctgaaagcgatcgctgaaacgggaacatctgtcacctctgacaccatg
aaatattacgaggaccttaaaggcgatctgaagacaaagaggtccagagagatagaaagc
ccggtctatggttaa
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