Methanococcoides orientis: J7W08_02000
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Entry
J7W08_02000 CDS
T08012
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
melo
Methanococcoides orientis
Pathway
melo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
melo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J7W08_02000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
melo03019
]
J7W08_02000
Messenger RNA biogenesis [BR:
melo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
J7W08_02000
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
J7W08_02000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
ECR1_N
KH_6
RRP4_S1
KH_1
RRP40_S1
KH_2
S1
DUF5581_N
RdRP_4
Motif
Other DBs
NCBI-ProteinID:
UGV41105
LinkDB
All DBs
Position
371460..372248
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AA seq
262 aa
AA seq
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MDRKIVIPGQLLSDKEKTAGPGTYVKDGKVYSLLYGIANVKNKVSVVPFSGKYYPSRKDF
IIGTVIDVTPSNWIMETGSPYDGLLHVSEYPKRVDSSEMRGCMSIGDCVIVRVKDVSKSM
KVELTMREPGTRVLTKGRIIDVAPAKVPRVIGHSGSMVSILKKESNCDVFVGKNGRIWIN
GRSGDMDHLAAAIEMIERESHISGLTDKVGRFLRNEPETVAESDADELIEEERSTLPAKE
DNVTEETCRKVDALLDDEVDEA
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atggatcggaaaatcgtaatccccggacagctcctttctgataaggagaaaacggcggga
ccgggaacatatgtaaaggacggcaaggtctattccttgctctatggaattgcaaacgtc
aagaacaaagtttcagttgtacctttctcaggaaagtattatccttcacgcaaggatttc
ataatcggtactgtaattgatgtaactccttcgaattggataatggaaactggttctcct
tatgacggattgcttcatgtttctgaatatccaaagcgcgtagattcctcagaaatgagg
ggatgtatgagcattggggattgcgtaattgttcgtgtaaaggatgtcagcaagtccatg
aaagtggaacttaccatgcgtgagcctggtacgagagtgctgacaaaaggtcgtatcatc
gatgttgcacctgcaaaggtccctcgtgtaatcggtcacagtggttccatggtctcgatc
cttaagaaggagtcgaactgtgatgtgttcgtaggaaagaacggccgtatctggatcaac
ggaagatcaggtgatatggatcatctggcggctgctattgaaatgatcgaacgtgaatct
catatatccggtttgacggataaagtgggcaggttcctgagaaatgaaccggaaacggtt
gcggagtcggatgcggatgagctgatagaggaagaaaggtcaactctgcccgcaaaagaa
gacaacgttacagaagaaacctgtcgtaaggtcgatgcccttcttgatgatgaagtggat
gaggcatga
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