Methanococcoides orientis: J7W08_02005
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Entry
J7W08_02005 CDS
T08012
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
melo
Methanococcoides orientis
Pathway
melo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
melo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J7W08_02005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
melo03019
]
J7W08_02005
Messenger RNA biogenesis [BR:
melo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
J7W08_02005
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
J7W08_02005
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
GD_AH_second
Big_2
Motif
Other DBs
NCBI-ProteinID:
UGV41106
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All DBs
Position
372299..373327
Genome browser
AA seq
342 aa
AA seq
DB search
MSDKPEKFIDENGIRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAVYGPREL
HPRRLQRPGEALVRYRYNMAAFSVEDRIRPGPSRRSTEISKVSGEAFEPVVMKQFYPSAV
IDVFAEVLQADAGTRTAAINAATLALVDAGIPMKGLVAACAVGKVDGQLVIDLNKPEDNY
GDADLPIAMTEDGEITLLQMDGNLTVEEINKGVEMVKAGCEQIFAIQKAALLEKFGTVDE
EEVLEDAELQAELSSEEDVSEAVEEVEELVEEAAAEETEAQEEEEVEEAETMFEEDVAEF
EEDEEENGEELEVVVAEVSEEEITSESEDIESNEEEGDKYEQ
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaaccggaaaaatttattgatgaaaacgggattcgccttgacggtaggcgt
gttgatgagatccgccctatgactgttgagatgggcgtactctcaagggcagatggttca
tgttatcttgaatggggtaataacaaggttcttgctgcagtttatggcccgagggaactt
cacccacgaaggcttcagcgtccaggtgaggcgcttgtaagatacaggtacaatatggca
gcattctctgttgaggaccgcatacgtcctggtccaagcaggaggagcaccgagatatcc
aaagtaagtggagaggcattcgaacctgttgttatgaaacagttttatccatcagctgtt
attgatgtgttcgcagaggtccttcaggctgatgccggaacaagaacagctgcgatcaat
gctgcaacacttgcattggtggatgccggtattcctatgaagggtctggtggctgcctgt
gctgtcggtaaggtggatggtcagcttgtgatcgatcttaacaaacctgaggacaactat
ggtgacgctgatctgcctattgcaatgaccgaagatggtgagataactctcttgcagatg
gacggaaacctgaccgttgaggagatcaacaagggtgtcgagatggtcaaggcaggctgt
gagcagatatttgcaatacagaaagctgctcttcttgaaaagttcggaactgttgatgag
gaagaggtccttgaagacgctgagcttcaggctgagctatcctccgaggaagatgtctct
gaagctgttgaagaagtagaagagcttgtagaagaggctgctgcagaggaaaccgaagcc
caggaagaggaagaggtcgaagaagctgaaaccatgttcgaagaagacgtcgctgaattt
gaagaggacgaggaagagaacggggaagagctcgaagtagtagtggcagaagtaagtgaa
gaagaaatcacttcagagtcagaggacattgagtccaatgaggaagagggtgacaaatat
gagcaatga
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