Methanococcoides orientis: J7W08_02010
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Entry
J7W08_02010 CDS
T08012
Name
(GenBank) exosome complex protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
melo
Methanococcoides orientis
Pathway
melo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
melo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J7W08_02010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
melo03019
]
J7W08_02010
Messenger RNA biogenesis [BR:
melo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
J7W08_02010
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
J7W08_02010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
UGV41107
LinkDB
All DBs
Position
373317..374099
Genome browser
AA seq
260 aa
AA seq
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MSNEAVSRLKKDFIFNLALKGQREDDRAFDEMRDIKLETNVIDKAEGSAKVCYGDTQVIV
GVKLQVGTPFPDSADKGVIITSMELNPIASPDFEAGPPRPKAIEMARVVDRGIRESGAID
LNKLCITEGEEVWMVFIDVHVLNDCGNLLDAASLGAIAALMTATIPAEREGRGEDTKMPI
REMPVSLTFVNVGGEYFIDASNNEESICDTKVTIVSNQDGSICAMQKSGAGSLSEAKFLE
AVEKSREIGAKIREEYLLNI
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgaagctgtatcaaggctgaaaaaagattttatattcaatctggctctcaag
ggtcagcgtgaggacgatcgtgcattcgatgagatgcgtgacatcaaacttgagaccaat
gttatagacaaggcagaaggttctgcaaaggtctgctacggcgatactcaggttattgtg
ggtgtaaagcttcaggtcggtacacctttcccggattctgctgataaaggtgtcataatc
accagtatggaattgaacccgatcgcttcaccagacttcgaggcaggccccccaaggccc
aaagctattgaaatggcacgcgtggtcgaccgtggtatccgtgaatcaggcgcaattgat
ttaaacaagttgtgtattacggaaggagaagaggtctggatggtctttatagacgtccat
gtcttaaacgactgcggaaacctgctggatgcagcatcacttggtgcaattgcagctctc
atgacagcaacgatcccggcagaacgcgaaggccgtggagaggatacgaagatgcctatt
cgtgagatgcctgtatcacttaccttcgttaatgttggtggtgaatatttcatcgatgca
agcaacaacgaggagtcgatctgtgatacaaaggtcactatcgtttccaaccaggatggt
tcgatctgtgcaatgcagaagagcggcgcaggctcactttcagaggcaaagttcctggaa
gctgttgaaaaatcacgcgaaataggcgctaagataagggaggaatacctccttaacata
tga
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