Methanococcoides orientis: J7W08_02265
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Entry
J7W08_02265 CDS
T08012
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
melo
Methanococcoides orientis
Pathway
melo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
melo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J7W08_02265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
melo03019
]
J7W08_02265
Enzymes [BR:
melo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J7W08_02265
Messenger RNA biogenesis [BR:
melo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J7W08_02265
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UGV41156
LinkDB
All DBs
Position
421309..422721
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AA seq
470 aa
AA seq
DB search
MSFDNLNLIFPLQRALSEEGYTTPTPIQKLSIPHLLNGRDMIGIAQTGTGKTAAFILPIL
HNMSASYKAPRPRFPRVLVLAPTRELAAQIGDSFATYGKFTRFKHTVIFGGVGQTPQVRA
LSKGVDSLVATPGRLLDLVQQGHVNLANVEYFVLDEADRMLDMGFLNDVYKVVGMLPQKR
QSLFFSATMSPEISTLARKLLTNPAHVEVTPQATTVERIDQFIFFVDSEDKNELLLQLLR
GKHLECVLIFTRTKHRANKVTEMLNKNNVPAGAIHGNKSQTHRTKTLQSFKSGQLRVLVA
TDIAARGIDIEDISHVINYDLPNIPESYVHRIGRTARAGADGTAYSFCAADERDFLRDIE
KLTNMDIEVAEHNYHSEKAKNATGDAAKPAPKQQRGRKGSTGTKGRGRGKKGEGKAKAKK
GDSKPKKVEGKNGRSENTNRGQGRNQTKKKSGQNPNKGSGRNSGKPRNQK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
gtgtcatttgataatctaaatttaatattcccgcttcagcgggcattgtccgaggaagga
tatactacacctactcctatacagaaactatccataccccatctgttgaatggcagggat
atgataggtattgctcagacaggtacgggcaagacagctgcattcatattaccaattctt
cacaatatgtctgcatcctacaaggcaccacgtccgagattccctcgagtgcttgtgctt
gcacctaccagggagcttgcagcacagataggggatagctttgccacttatggcaaattc
acccgcttcaaacatactgtgatattcggaggtgttggtcagacaccacaggtaagagct
ctctcaaagggtgtggattcccttgtggcaactcctggcagactcctggacctggtacag
cagggtcatgtcaaccttgctaatgtggaatattttgtacttgatgaagcggacaggatg
cttgacatgggctttctcaatgatgtatacaaagttgttggaatgttgccacaaaagcgt
cagtcgcttttcttttcagctaccatgtccccggagatatccacgcttgccagaaaacta
ctaacgaatcctgcacatgtagaggtcacccctcaggcaacaactgttgaacgcatagac
cagttcatctttttcgtggattctgaggacaagaacgaattactgctacaattactaaga
ggcaagcatctggagtgtgttctcatattcacacgtacaaagcatcgtgctaacaaggtc
actgagatgctcaacaagaacaatgtccctgcaggtgctattcacggcaacaagtcccag
acccaccgtacaaaaacacttcagagcttcaagtccggacaactgcgtgtactggttgca
acagacatagctgctcgtgggatcgatatcgaggacatatcacatgtaataaactatgac
ctgccgaatatccctgagagctacgtgcaccgcataggacgtacagcaagagcaggagct
gatggaacagcatactctttctgtgcagctgatgagcgagacttcttgcgtgatatcgaa
aaactcactaatatggatatcgaggtcgctgaacacaattatcattcagaaaaggcgaaa
aatgccacaggtgatgcagcaaagccagctccaaaacaacagagggggcgaaagggaagc
accggaactaaaggcagaggcaggggtaaaaagggagaaggcaaagctaaagctaaaaag
ggagatagcaagcctaaaaaagtagaaggtaaaaatgggcgatcagaaaataccaatagg
ggccagggtaggaatcagacaaagaaaaagtctggtcaaaacccaaataagggctctggt
cgaaactccggtaagcccagaaaccagaagtaa
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