Methanococcoides orientis: J7W08_07085
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Entry
J7W08_07085 CDS
T08012
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K03044
DNA-directed RNA polymerase subunit B' [EC:
2.7.7.6
]
Organism
melo
Methanococcoides orientis
Pathway
melo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
melo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J7W08_07085 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
melo03021
]
J7W08_07085 (rpoB)
Enzymes [BR:
melo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J7W08_07085 (rpoB)
Transcription machinery [BR:
melo03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
J7W08_07085 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
DUF1451
Zn_ribbon_NUD
Zn_ribbon_RPAB4
Motif
Other DBs
NCBI-ProteinID:
UGV39888
LinkDB
All DBs
Position
complement(1490256..1492070)
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AA seq
604 aa
AA seq
DB search
MTEAKVFLDGELIGTHNNPVELVADIRKQRRNGMLSSQLNVTLYEDIHEVIISSDMGRAR
RPVIVVEDGVPLVTGEHVEKLNAGEISFLDLVGQGCVEYLDAEEEENAFIGLYEEDLTPN
HTHLEIDPSLILGICTGMVPYPEHNASPRNTMGAAMIKQCIGVSTSNIKLRPDTRAHVLH
YPQKALTRTHTCESIHFDDRPAGQNFVVAVMSYEGHNIEDALVFNKGSIQRGLGRSHFLR
TFEGEERRYPGGQEDKFEIPDSEFRGARSAEAYANLDIDGLVNPETIVGPNAVLIGKTSP
PRFLEEQSDFGITVEQRRESAITMRSNEKGIVDTVILTESINGTRLTKVKIRDQRIPEIG
DKFASRHGQKGVIGLIVPYQDMPFTEGGMVPDLVINPHAIPSRMTVAHVLEMIGGKVGCI
EGHRINATAFSGETEDDIRDGLKKHGFSHTGKEVFSDGVTGKKIQADVFVGVILYQKLHH
MVASKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMTLKERLLDESDK
VVELVCGHCGMVATFDRTRNIRYCSNCGAETDIHPVEMSYAFKLLLDEIKSLGVAPRLRL
DDAV
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagcaaaggtcttccttgatggggaacttatcggaacacataacaatccggta
gagctggtcgcagacataaggaagcagcgccgtaatggtatgctctccagtcagctgaat
gtaactctttatgaggacattcatgaagttatcatcagttccgacatgggtcgtgccaga
aggccggtcatcgtcgtagaagatggagttcctctggtcacaggtgaacatgtagagaaa
ctaaatgccggtgaaatatcattccttgatcttgtagggcagggatgtgttgagtatctg
gatgctgaagaagaggagaatgctttcattggtctttacgaagaggaccttactccaaat
cacactcatcttgagatcgacccttcactgatccttggtatctgtaccggtatggtccca
tatccggaacacaatgcttctccgaggaacacaatgggtgcagcgatgatcaagcagtgt
attggagtatccacctctaacatcaagcttaggccagacacacgtgcacacgtactccac
tatcctcaaaaggcacttacacgcactcacacatgtgagtcaattcactttgatgaccgt
cctgcagggcagaacttcgtagttgctgttatgtcctacgaaggtcacaatattgaggat
gcacttgttttcaacaaaggttccattcagagaggtctcggaaggagccacttcctgagg
acattcgagggagaagaacgacgttaccctggtgggcaggaagacaagttcgagatacct
gactctgagttcaggggtgcccgcagtgcagaggcatatgcaaaccttgacattgacggt
cttgtgaaccctgagaccattgtaggtccaaacgctgttcttatcggaaagaccagtcct
ccaaggttccttgaagagcagtctgatttcggtataactgttgagcagcgcagggaaagt
gcaattaccatgcgttccaacgagaaaggcatcgttgacactgtcattcttacagaatct
atcaacggaacccgtcttacaaaggttaagataagggatcagaggatccctgagatcggt
gacaaatttgcatcaagacacggtcagaaaggagttatcggtctgatagttccatatcag
gatatgccattcactgaaggcggtatggttcctgatcttgttattaatccacacgcaatc
ccttcacgtatgactgttgctcacgttcttgaaatgatcgggggtaaggttggttgtatc
gaaggtcaccgcattaacgcaactgctttctcaggtgagaccgaggatgacattcgcgat
ggtctgaagaaacatggtttctcacacacaggaaaggaagtattctctgatggtgtaacc
ggaaagaagatccaggcagatgtgttcgtaggtgtgatcctttatcagaaactgcatcac
atggtcgcatcaaagatacacgccaggtccagaggtcctgtacaggtattgacccgtcag
ccaacagaaggacgtgctcgtgagggtggtctgaggtttggtgaaatggaaagagatgta
ctgatcggacacggtgctgcaatgaccctgaaggaaaggttgcttgatgaatctgacaag
gtcgtagagcttgtatgtggacactgtggaatggttgctacctttgacaggacacgcaac
ataaggtactgttcgaactgtggtgcggaaacagatattcacccggtagaaatgagctat
gctttcaagttgctccttgatgagatcaaatctctgggagttgctccaagacttagactt
gatgatgcagtgtga
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