KEGG   Methanococcoides orientis: J7W08_08580
Entry
J7W08_08580       CDS       T08012                                 
Name
(GenBank) exosome complex RNA-binding protein Csl4
  KO
K07573  exosome complex component CSL4
Organism
melo  Methanococcoides orientis
Pathway
melo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:melo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J7W08_08580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:melo03019]
    J7W08_08580
Messenger RNA biogenesis [BR:melo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     J7W08_08580
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     J7W08_08580
SSDB
Motif
Pfam: ECR1_N EXOSC1 S1 HypA Zn_ribbon_4 Zn_ribbon_3 Cas12f1-like_TNB DZR Zn_Tnp_IS91 RUBY_RBDX DUF1451 OB_RRP5_4th Zn_ribbon_NUD Zn_ribbon_RPAB4 Ctf8 Zn_ribbon_8 ECR1_N_2 Zn_ribbon_5 HVO_2753_ZBP Zn_ribbon_TiaS DUF7129 Trm112p DUF7130
Other DBs
NCBI-ProteinID: UGV41953
LinkDB
Position
1773560..1774129
AA seq 189 aa
MSAEEKTFVLPGDLIGTTEEFEGGDNTFTVRGDIHSLATGHVMVNKKRRKITVKPTTSVP
PTIGRGDVVVGTIMNVRDSMALVQIGAIKGNDDREFINPGIAAIHVSNVKESYVKEMSQE
FAVSDVVKAKIINTDNMRMTTAGDDLGVMTATCSNCGTTLNLDGEKLKCPECGHIESRKL
SSGYGTGII
NT seq 570 nt   +upstreamnt  +downstreamnt
atatctgctgaagagaagacctttgtactgccaggagaccttatcggcactacagaagag
ttcgaaggcggagacaacacatttacagtcaggggagatatccactcactagctaccgga
catgtaatggtcaacaagaaacgcaggaagatcactgtcaaaccaaccacaagcgtacct
ccaactattggaagaggagatgttgtcgttggaacgatcatgaacgtgcgcgattccatg
gcacttgtgcagatcggcgctatcaaaggaaacgatgaccgtgagttcatcaatccgggt
atcgcagctatccacgtgtccaatgtgaaggaatcatacgtcaaggaaatgtcacaggag
ttcgcggtttcagatgttgtaaaggcaaagatcatcaacactgacaacatgaggatgaca
actgccggcgatgaccttggagttatgaccgcaacatgttcaaattgtggcaccacactt
aatctcgatggcgaaaaactgaaatgccctgagtgcggacatattgaatcacgcaagttg
tcttcaggctacggcacaggtataatttga

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