Candidatus Methanoliparum sp. LAM-1: MTLP_00540
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Entry
MTLP_00540 CDS
T07692
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
melu
Candidatus Methanoliparum sp. LAM-1
Brite
KEGG Orthology (KO) [BR:
melu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
melu03032
]
MTLP_00540 (topA)
03400 DNA repair and recombination proteins [BR:
melu03400
]
MTLP_00540 (topA)
Enzymes [BR:
melu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MTLP_00540 (topA)
DNA replication proteins [BR:
melu03032
]
Prokaryotic type
DNA Topoisomerases
MTLP_00540 (topA)
DNA repair and recombination proteins [BR:
melu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MTLP_00540 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Toprim_4
DUF2283
AstE_AspA_hybrid
Motif
Other DBs
NCBI-ProteinID:
BDC35372
LinkDB
All DBs
Position
complement(55294..57339)
Genome browser
AA seq
681 aa
AA seq
DB search
MNRLIITEKNSTAKRITDILSNKDYKTRRLENINVYSFSTKEGYNVDVIGLKGHILRLKF
PDDKNNWSDIPPEDLLWSDIEKKPISEKYIKALQKLGKDADEVIIATDYDREGELIGVEA
LDVILDVNKNIRIKRAKYSAITEEEIIKSFSNLLDMDYNLANSANVRSIIDLIWGASLTR
FLSLSAKRLGNSYLSVGRVQTPTLALIKRKDDEIYNFVPEPYLEIYAECLKNGEKFLAKH
KKNRFKDENEAKKIEKVITKVKKGVVTEIEKNIIKTDPPLPFNTTSFLKAVSSIGFTVSK
AMDIAEKLYNRGLISYPRTDNTSYAGIEIEKILGMLSKSDEFSSCAKELLDKKIDTTLIK
RGKQTKDHPSIHPVRYERLKDQDWKIYELITRRFLASLYDRSTMENTKVEIDINGEIFRA
NGSKFLDKGWRSVYYYKNIQEVVLPKLIKKDRVIVCNIKLEKKKTNPPHRYSQGKLIQKM
ETLGLGTKSTRHDIIRKLYTRGYVYDNPLKSTKIAKTVIETLEKYAPDITKVDMTSKLEE
DMYSIAEGKIPGEDVINESRDLLSEIFERLRDNEKDISKELYDKIKGDKIIGRCEKCGGD
LVIIRSRRGTRFVGCSRYPVCDFSLPLPKKGRLVITNELCKEHGIKLLKVLYNKKIWNYG
CPYCNYIEWMNKNEEYSTNFI
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcgcttaataataaccgagaagaatagcaccgctaaaagaatcacggatatatta
tctaacaaagattataagactagaagactcgaaaatataaatgtctattcgttttctaca
aaagaagggtataatgtagatgtcataggtcttaaaggtcatattctaagactaaaattt
cctgatgacaaaaataattggtcggatattccaccagaagaccttttgtggtcagatata
gaaaaaaagcctatatctgaaaaatatataaaagcattgcaaaaattgggtaaagatgcc
gatgaagttattattgctactgattacgatagagagggggagttgatcggtgttgaagca
ttagatgttatattagacgttaataaaaatatcaggatcaaaagagcaaaatatagtgca
ataacggaggaagagattataaaaagcttctccaatcttttggatatggattataatctt
gcaaattctgctaatgtgagaagtatcatcgatctgatatggggtgcaagtctgaccaga
ttcttatctctttcggcaaagcgtttaggaaacagttatctatccgtaggaagagtgcag
acaccaactttagctttaataaaaagaaaagatgatgagatatataattttgtgccagaa
ccatatttggagatatatgcggaatgcttaaaaaatggggagaaatttcttgctaaacat
aaaaaaaatcggtttaaagatgagaacgaggctaaaaagatagaaaaagttataaccaaa
gtaaaaaagggtgtcgtaacagagatagaaaaaaatattataaagaccgatccgccgctt
ccttttaatactacatctttcttaaaagcagtgtcatcaataggttttacggtatcaaaa
gcaatggatattgcagaaaaactatacaatcgtggtttgatatcctatcctcgaaccgat
aatacttcttatgctggaatagagattgaaaagatattagggatgttatctaaatcagat
gagttttccagttgtgcaaaagaattgttagataaaaaaatagatactacactgattaaa
agaggtaaacaaacgaaagatcatccatctatccatcctgtgagatacgaaagattaaag
gatcaagattggaagatttacgagttgatcaccagaagatttttggcatctttatatgac
agatctacgatggagaacacaaaggtagagatagatataaatggggaaatattccgtgcc
aacggatcaaaatttttagataaaggatggagatctgtgtattattataaaaacatacaa
gaggtcgtattaccaaaattaatcaagaaagaccgtgttattgtctgcaatatcaagtta
gaaaagaaaaagacaaatcctccacacaggtatagtcaaggtaagcttattcaaaagatg
gagacgttagggttagggacaaaatcgactaggcatgacattataagaaaactttacacg
aggggttacgtttatgacaatcctcttaaatcgacgaaaatagcaaagactgtaatagaa
acactcgaaaaatatgctccagatataacaaaggtagatatgacgagtaaactcgaagaa
gatatgtattctatcgcagaaggcaagatcccaggagaagacgtgataaacgagtccaga
gatttgttatctgagatattcgaaagattgagagataatgagaaggatatctcaaaagaa
ttgtacgataagataaaaggagataaaataataggacgatgcgagaagtgtggtggtgat
ttagtgataataagatcacggagaggtacgaggtttgtcggttgttcaagatacccagtt
tgtgatttttctctgccattgcctaaaaaaggacggttggttataacaaacgaactatgc
aaagaacatggaataaaactcttaaaagtgctgtataataaaaaaatatggaattatggt
tgtccttattgtaactatatagaatggatgaataagaacgaagaatattctacaaatttt
atttaa
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