KEGG   Candidatus Methanoliparum sp. LAM-1: MTLP_10410
Entry
MTLP_10410        CDS       T07692                                 
Name
(GenBank) hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
melu  Candidatus Methanoliparum sp. LAM-1
Pathway
melu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:melu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MTLP_10410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:melu03019]
    MTLP_10410
Messenger RNA biogenesis [BR:melu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MTLP_10410
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     MTLP_10410
SSDB
Motif
Pfam: ECR1_N ECR1_N_2 EXOSC1 Zn_ribbon_TiaS S1 C1_1 Prok-RING_1 Zn_ribbon_DUF2089 Zn_ribbon_NUD DZR Zn_ribbon_RPB9 Zn_ribbon_6 OB_RRP5_4th HypA DZR_2 DNA_ligase_ZBD MqsA_antitoxin RUBY_RBDX zf-UDP zf_Rg FtrD-like C1_2 Zn_ribbon_RlmA DUF7567 Trm112p zf-MYND
Other DBs
NCBI-ProteinID: BDC36359
LinkDB
Position
complement(967678..968250)
AA seq 190 aa
MEKKIEIEEKIVLPGDFICTTEEYVPGSNTYNNEGSICSSIIGIVKLDDKLHKIDVLPLV
MVPPEIKQDSIVLGKIILLKNSFAVLNIERVKGYENRSANVEGTIHISNIQHTYIKTIDK
AFNVGDIVKAKVISNNPIRLTTQDKNLGVIKAFCPVCGETLEKKEKGLKCSRCNTRYQRK
ISEDYGWGMF
NT seq 573 nt   +upstreamnt  +downstreamnt
atggagaagaagatagaaattgaggaaaaaatcgtacttccaggcgattttatatgtacc
actgaagaatatgtacctggaagcaatacttataacaatgagggaagtatctgttcttcc
attattggtattgtaaaattagatgataaactacacaagatagatgtactaccactggtt
atggttccacctgaaataaaacaagactctattgttcttggtaagattattcttctaaaa
aattcgtttgcagtcttaaacatagagagagttaaaggatacgagaatagatctgcaaac
gtggaaggaactatacatatatcgaatatacaacatacatacataaagacgatagacaaa
gcgtttaatgtcggtgatattgtgaaagcaaaggtaataagcaacaatccaatacgatta
acaactcaagacaagaatctgggtgttataaaggcattctgtcctgtttgtggagagact
ttggagaagaaggaaaaagggttaaaatgttccagatgtaatacaagatatcaacgaaaa
atatccgaagattatggatgggggatgttttag

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