Candidatus Methanoliparum sp. LAM-1: MTLP_10410
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Entry
MTLP_10410 CDS
T07692
Name
(GenBank) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
melu
Candidatus Methanoliparum sp. LAM-1
Pathway
melu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
melu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTLP_10410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
melu03019
]
MTLP_10410
Messenger RNA biogenesis [BR:
melu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MTLP_10410
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MTLP_10410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
ECR1_N_2
EXOSC1
Zn_ribbon_TiaS
S1
C1_1
Prok-RING_1
Zn_ribbon_DUF2089
Zn_ribbon_NUD
DZR
Zn_ribbon_RPB9
Zn_ribbon_6
OB_RRP5_4th
HypA
DZR_2
DNA_ligase_ZBD
MqsA_antitoxin
RUBY_RBDX
zf-UDP
zf_Rg
FtrD-like
C1_2
Zn_ribbon_RlmA
DUF7567
Trm112p
zf-MYND
Motif
Other DBs
NCBI-ProteinID:
BDC36359
LinkDB
All DBs
Position
complement(967678..968250)
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AA seq
190 aa
AA seq
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MEKKIEIEEKIVLPGDFICTTEEYVPGSNTYNNEGSICSSIIGIVKLDDKLHKIDVLPLV
MVPPEIKQDSIVLGKIILLKNSFAVLNIERVKGYENRSANVEGTIHISNIQHTYIKTIDK
AFNVGDIVKAKVISNNPIRLTTQDKNLGVIKAFCPVCGETLEKKEKGLKCSRCNTRYQRK
ISEDYGWGMF
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaagatagaaattgaggaaaaaatcgtacttccaggcgattttatatgtacc
actgaagaatatgtacctggaagcaatacttataacaatgagggaagtatctgttcttcc
attattggtattgtaaaattagatgataaactacacaagatagatgtactaccactggtt
atggttccacctgaaataaaacaagactctattgttcttggtaagattattcttctaaaa
aattcgtttgcagtcttaaacatagagagagttaaaggatacgagaatagatctgcaaac
gtggaaggaactatacatatatcgaatatacaacatacatacataaagacgatagacaaa
gcgtttaatgtcggtgatattgtgaaagcaaaggtaataagcaacaatccaatacgatta
acaactcaagacaagaatctgggtgttataaaggcattctgtcctgtttgtggagagact
ttggagaagaaggaaaaagggttaaaatgttccagatgtaatacaagatatcaacgaaaa
atatccgaagattatggatgggggatgttttag
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