Candidatus Methanoliparum sp. LAM-1: MTLP_11580
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Entry
MTLP_11580 CDS
T07692
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
melu
Candidatus Methanoliparum sp. LAM-1
Pathway
melu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
melu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTLP_11580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
melu03019
]
MTLP_11580
Messenger RNA biogenesis [BR:
melu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MTLP_11580
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MTLP_11580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_6
ECR1_N_2
RRP4_S1
S1
KH_2
RRP40_S1
ECR1_N
KH-I_KHDC4-BBP
KH_N4BP1_2nd
Motif
Other DBs
NCBI-ProteinID:
BDC36476
LinkDB
All DBs
Position
1078301..1078960
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AA seq
219 aa
AA seq
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MSKDIVIPGYLLGEDINGGDGTFKEGNRVYSAVYGIAKRVNNKIEVISLKGKYNPKKGDL
LIGIVTDITFSMWILDINSPYYGFLHLSDYTKKIEKEDMSKEIGIGETVIAKVKEIEMPI
RINLTMNDNRCKIIRTGVVIDVSYAKIPDIIGKGGSTINLIKKKTNCDIYVAQNGRVWIN
GSDEMIKLAINIIKMVEKDGCFDNISEKITREIDKDGDR
NT seq
660 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagatattgttataccgggatatctgcttggtgaggatataaatggtggagat
ggtacttttaaggagggtaatagagtttactcggcagtttatgggatagcaaaaagagtg
aacaataagatagaggttatctctttaaaaggtaaatataatcctaaaaaaggagactta
ctgataggaatagtgacagatataacgttttctatgtggatacttgatataaattcacca
tattacggatttttacatctatctgattataccaaaaagatagagaaagaagatatgtct
aaagagattgggatcggagagacggttattgcaaaggtaaaagagatagagatgcccata
aggataaatttgaccatgaatgataatagatgtaaaataatccgcactggtgttgtaatt
gatgtctcttatgccaaaattccagatataattggaaaaggaggatctacaataaattta
ataaagaaaaaaacaaactgcgatatttatgtagcacaaaatggaagagtctggataaat
ggcagtgatgagatgattaaattagcaataaatattataaaaatggttgaaaaggatggg
tgttttgataacatttcagaaaaaataaccagagagatagataaagatggagatagatga
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