Candidatus Methanoliparum sp. LAM-1: MTLP_11600
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Entry
MTLP_11600 CDS
T07692
Name
(GenBank) RNA-binding protein
KO
K12589
exosome complex component RRP42
Organism
melu
Candidatus Methanoliparum sp. LAM-1
Pathway
melu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
melu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTLP_11600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
melu03019
]
MTLP_11600
Messenger RNA biogenesis [BR:
melu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MTLP_11600
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MTLP_11600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Pox_A28
Motif
Other DBs
NCBI-ProteinID:
BDC36478
LinkDB
All DBs
Position
1079679..1080485
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AA seq
268 aa
AA seq
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MSSEDILSEIRRDYIYRLVRNGERIDGRKFDEYREINIEIGPIERAEGSARVKLGTTDVL
AGVKMQIGEPFPDTPDQGVIITNAELIPLASPTFEPGPPDENAIELARIVDRGIRSSNAI
DLDKLCIDPGKEVWMVFIDLHILDHNGNLVDASSLAAIAALFNTKIPNTKFGIDKDDERL
AINDIPIATTSTEIDNNFIFDPCLDEENAANVALTVIITSKGELCGMQKSGIGRIPVETL
PNIIDSSINMGEKIRKILLKALENNITV
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcgaagatatattatcagaaatccgccgagattatatctataggttggtaaga
aacggcgagaggatagacggaagaaaatttgatgagtacagggagataaatatagaaatt
ggtcctattgaaagagcggagggatctgcacgcgtaaaattaggaactactgatgttttg
gcgggtgttaagatgcagataggtgagccatttccagatacaccagatcaaggtgtgata
ataacaaatgcagaattgataccgcttgcatcaccaacatttgagccaggaccacctgat
gagaatgcaatagaacttgcaaggatcgtagataggggcataagaagttctaacgctata
gatctcgataaattatgcatagatcctggtaaagaggtctggatggtatttatagatcta
catatactcgatcataatggaaaccttgtcgatgcgtcatcacttgctgccatagctgct
ttgttcaatactaaaattcctaacaccaaatttggtatagataaagatgatgaaagattg
gctataaacgatattcctatagcaaccacctcaacagagatagataataattttatcttt
gatccatgcttagatgaagaaaatgctgcaaatgttgcattaacggttataattactagt
aaaggagaattatgtggaatgcagaagagcggtataggtagaattcctgttgaaactctt
cctaatattatagattcttctataaatatgggagaaaaaataagaaagatattattaaaa
gcattagagaataatataacagtataa
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