Candidatus Methanoliparum sp. LAM-1: MTLP_13370
Help
Entry
MTLP_13370 CDS
T07692
Name
(GenBank) recombinase RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
melu
Candidatus Methanoliparum sp. LAM-1
Pathway
melu03410
Base excision repair
melu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
melu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MTLP_13370
03430 Mismatch repair
MTLP_13370
03440 Homologous recombination
MTLP_13370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
melu03400
]
MTLP_13370
DNA repair and recombination proteins [BR:
melu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MTLP_13370
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MTLP_13370
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MTLP_13370
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
CDC45
Motif
Other DBs
NCBI-ProteinID:
BDC36655
LinkDB
All DBs
Position
complement(1244737..1246101)
Genome browser
AA seq
454 aa
AA seq
DB search
MKKDIISYSQEFADKILSSKRKFTLVSHIDADGISSMAIMARTLKKEKIKFKGLFLRQLD
DLTIKKIQRDDSIKLFLDLGSGQQELLRNYQFNKEDILIIDHHIPQGDYYDQFNSHMFNE
EKISASGLCYLVSRSINDNYDLSKLAVVGAVGDMMANETNRLEGVMREILDDGVKEGIIE
VTNDLSIYGISTRPIHIMLEYLDDPYIDGLTDNAVECVNLLSDLQIPIRDQEDWRVWEDL
TKEEKMKIQSAISSRLSTEDLKKLLGEEYIFKDERRRTPLRNAKEFSTLLNACGRWVKPK
TGLYVCLGDRDRYYEDALIMLKNHKRVIRDLFNHILKEGVVELDAIQYIDVKDYFPDTII
GIGAGMVLSKVNRKKPIIIIGDIIGEKDVRKVSARSNYEQVKMGVNLQKAIISAAESFGG
GGGGHSIAAGGHIPKGCEKEFLLRMDEYIKEQIS
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaggatattatttcatattcgcaagaattcgcagataaaattttatcatcaaaa
cgaaaatttacactggtatctcatatagatgcagatggtatttcatctatggctataatg
gcacgaacattaaaaaaagaaaagattaagtttaaaggattatttttaagacaattggat
gatctaacaattaaaaaaattcaaagagacgattcaataaaactctttttagatttaggc
agcggacagcaggaattactccgtaattatcaattcaacaaagaagacatcttaattata
gaccatcatattccacaaggcgactattacgatcaatttaattctcatatgttcaacgaa
gagaagataagtgcaagcggtctatgttaccttgtttccagaagtataaacgataattac
gatctttccaaacttgccgtggtaggtgcagtaggggacatgatggcgaacgagacgaac
aggctggaaggagtaatgagagagatactggatgacggtgtaaaagaaggaattatagag
gtgacaaacgatctttcgatttatggaatatctactcgacctattcatattatgctggaa
tacttggacgatccttatatagatggattgaccgataacgcggtagagtgtgtaaatctt
ctatcagatctccaaatacccatacgagatcaagaagattggcgtgtatgggaagattta
acaaaagaagaaaagatgaagatccagtcggcgatatcttcgagacttagcactgaggat
ttaaagaagttgttgggtgaagaatatatctttaaagatgagagaagaagaacaccttta
agaaatgcaaaagagttttcaacattactaaacgcttgtggtagatgggttaagccaaag
accggattatatgtatgtttaggagatagagatcgttattatgaagacgctttaataatg
ctcaaaaatcataaaagagttataagagacctattcaatcatatcttaaaagagggcgtt
gttgagctggatgccatccaatatatagatgtcaaagattattttccagatacgataatc
ggtataggtgcaggaatggttttatcaaaggtcaacagaaagaaaccgatcataattata
ggtgatattataggagagaaggatgtcagaaaggttagtgccagatcaaattatgaacag
gttaaaatgggtgtaaatttacaaaaagcgataatttccgcggcagagtcgttcggtggc
ggtggaggaggacacagtatcgcagcaggtggtcatatccctaaaggatgcgaaaaagag
tttttattaaggatggacgaatatatcaaagaacagatatcataa
DBGET
integrated database retrieval system
