Methanoculleus marisnigri: Memar_1318
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Entry
Memar_1318 CDS
T00477
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mem
Methanoculleus marisnigri
Pathway
mem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Memar_1318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mem03019
]
Memar_1318
03400 DNA repair and recombination proteins [BR:
mem03400
]
Memar_1318
Enzymes [BR:
mem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Memar_1318
Messenger RNA biogenesis [BR:
mem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Memar_1318
DNA repair and recombination proteins [BR:
mem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Memar_1318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HEM4
Motif
Other DBs
NCBI-ProteinID:
ABN57248
UniProt:
A3CV48
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All DBs
Position
1302364..1303623
Genome browser
AA seq
419 aa
AA seq
DB search
MDRLHLILQRYFGHSAFNLYQREIIEDLLAGRDVLAVLATGGGKSLCYQVPALVGDGVVL
VISPLIALMKDQVDDLQARGVGAEALNSSGSYAATRRILSELKEGLIQILYVSPEKAVGE
DFIDLMASLPVTLIAVDEAHCISMWGHQFRPEYRSLSVLKERFPGVPMVALTATATPDVR
DDIARQLNLSDPSVYVGSFNRENLRYVVVGKEEDAYERLRAYLRGRRGDAGIVYVATRDG
AETLAARLRAGGIPALPYHAGMTAAARRETQDRFIGGKVPVVCATSAFGMGIDKPDVRFV
VHYDMPKTLEAYYQESGRAGRDGKESDCILYYSDEDARRLRSFIDRDLASEFQRKVARSK
LQSMVDYCTTTECRRKALLGYFGERIEEPCNGCDACAPAGKARPRSGRRKRGATRPASG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcctgcacctgatcctccagcgctacttcgggcattctgcgttcaacctctac
cagcgggagatcatcgaagaccttcttgccgggcgcgacgtcctcgcggtgctcgcgacc
ggagggggaaaatcactctgctaccaggtccccgcgctcgtcggcgacggtgtcgtgctg
gtgatatcgccgctcatcgccctgatgaaggaccaggtcgacgacctgcaggcccgcggg
gtcggcgcggaagcgctgaactcttccggatcatatgccgcgacgcgccggatcctctcg
gaactcaaagaggggcttatccagatcctctacgtctcgccggagaaggcggtcggcgaa
gattttatcgacctgatggcgtcccttccggtcaccctgatcgcggtcgacgaggcgcac
tgcatatcgatgtgggggcaccagttccgcccggagtaccggtcgctttcggtgctcaag
gaacggttccccggggtgccgatggttgccctgacggcgaccgcgaccccggacgtccgc
gacgacatcgcgcggcagctcaatctttcggacccttcggtctacgtcgggagtttcaac
cgcgagaacctccgctacgtcgtcgtcggaaaggaggaggacgcgtacgagcggctccgg
gcctatctgcggggcaggagaggggacgccgggatcgtctatgtcgcaacccgggacggg
gccgagacgctcgcggcacggctccgcgccggcgggattccggcactcccctaccatgca
ggcatgacggcggccgcccggagagagacgcaggacaggttcatcggcgggaaggttccg
gtcgtctgcgcgacgagcgcgttcggcatggggatcgacaagccggacgtgcggttcgtc
gtccactacgacatgcccaagaccctcgaggcctactaccaggagagcggccgggccgga
agggacggcaaggagagcgactgcatcctctactacagcgacgaagatgcgcggcgcctc
agatcgttcatcgaccgcgatcttgcgtccgaattccagcgcaaggtcgcacgctcgaaa
ctccagagcatggtggattactgcaccacgacggagtgccggagaaaggcgctcctcggg
tacttcggggagcgaatcgaggagccctgcaacggctgcgacgcctgtgctccggcagga
aaggctcgtccccggtccgggcgcaggaaacgcggtgccacccgcccggcatccggctga
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