Methanoculleus marisnigri: Memar_1651
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Entry
Memar_1651 CDS
T00477
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mem
Methanoculleus marisnigri
Brite
KEGG Orthology (KO) [BR:
mem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mem03016
]
Memar_1651
Enzymes [BR:
mem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Memar_1651
Transfer RNA biogenesis [BR:
mem03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Memar_1651
Prokaryotic type
tRNA splicing ligases
Memar_1651
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABN57578
UniProt:
A3CW28
LinkDB
All DBs
Position
complement(1658341..1659777)
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AA seq
478 aa
AA seq
DB search
MLAGINKIGDLEWEVPIGYVPDMRVPGRFFLSGTLAETLEEGAVRQLANVATLPGIVKHS
LAMPDIHWGYGFPIGGVAAFDMTEGVISPGGVGFDINCGVRLITTPLTEADLARRKRELI
ERLFDAVPTGVGAKSSLRVSNKDLSAVMVDGARWAVERGLGTEADLVRCEGEGAMPGADP
DAVSAKARQRGVPQIGTLGAGNHFLEVQVAREIVDPEAAKAFGIAEGQVCFMVHCGSRGL
GHQVATDHLRTLEGALPKYGIRLPDRQLACAPIDSPEGRAYYGGMVSAANYAWTNRQVIM
HEARKVFVDLFGIDYDEMRLVYDVAHNVAKFERHDVDGVSTEVCVHRKGATRAFGPGAEG
VPREYAGIGQPVIIPGSMGTSSYLLHGTSTAMEKTWGSTCHGAGRVLSRSKAKKEVRGKE
LRERLAGEGILVRAHSDNALAEEAPAVYKPSREVVRVVHEAGLSDIVARLEPLGVIKG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccggaatcaataagatcggagacctcgaatgggaggttcctatcggatacgtc
cccgatatgcgggtgccggggcgctttttcctctccgggacactggcggagacgctcgaa
gaaggagccgtccgccagctcgcgaacgtcgcgacgctcccggggatcgtgaaacactcg
cttgccatgcccgatatccactggggatacgggtttcccatcggcggcgtcgccgcgttc
gacatgaccgaaggggtcatctctcccggcggggtcgggttcgacatcaactgtggcgtc
cggctgatcacgacgcccctgaccgaggccgatctcgcccgccggaaacgggaactgatc
gagcggctcttcgacgccgttccgaccggtgtgggtgcgaagagttccctgcgggtctcg
aacaaggatctctccgcggtcatggtcgacggcgcccggtgggcggtcgagcgcgggctc
ggcaccgaagccgacctcgtccggtgcgagggcgagggggcgatgccgggcgccgacccc
gacgcggtcagcgccaaagcgcggcagcggggcgtgccgcagatcgggacgctcggcgcc
ggaaaccacttcctggaggtccaggtggcgagggagatcgtcgaccccgaagcggcaaag
gccttcgggatcgccgaagggcaggtctgcttcatggtccactgcggctcacgcggcctc
ggccaccaggtcgcgaccgatcatttgcggacgctcgagggcgcgcttccgaagtacggg
atacgcctccccgaccggcagctcgcctgcgctccgatcgactctccggaaggccgtgcc
tactacggtggcatggtctcggccgcgaactacgcttggacgaaccggcaggtcatcatg
cacgaagcgaggaaggtcttcgtggacctcttcgggatcgattacgacgagatgcggctc
gtctacgacgtcgcgcataacgtcgccaagttcgagcgccacgacgtcgacggggtctcg
acggaggtctgcgtccaccgcaaaggagcgacgcgagcgttcggcccgggagcggagggc
gtcccccgggagtatgccgggatcgggcagccggtgatcatccccgggagcatggggacg
tcgtcctacctcctccacggcacgtcgaccgcgatggagaagacgtgggggagcacctgc
cacggggcggggagggtgctcagccggtcgaaggcgaagaaagaggtccgcgggaaggaa
ctccgggaacgcctcgcgggagagggtatcctggtgcgtgcccacagtgacaacgccctc
gcggaggaggctccggcagtctacaagccgagccgggaagtggtgcgtgtggtgcacgaa
gcgggcctctcggatatcgtcgcccggctggagccgctcggggtgatcaaggggtga
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