Methanoculleus bourgensis MAB1: MMAB1_0816
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Entry
MMAB1_0816 CDS
T04314
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA (fragment)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mema
Methanoculleus bourgensis MAB1
Pathway
mema03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mema00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMAB1_0816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mema03019
]
MMAB1_0816
03009 Ribosome biogenesis [BR:
mema03009
]
MMAB1_0816
Enzymes [BR:
mema01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MMAB1_0816
Messenger RNA biogenesis [BR:
mema03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MMAB1_0816
Ribosome biogenesis [BR:
mema03009
]
Prokaryotic type
rRNA helicases
MMAB1_0816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Hyccin
NAT10_TcmA_helicase
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CVK32030
UniProt:
A0A0X3BJJ5
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All DBs
Position
1:complement(659682..660515)
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AA seq
277 aa
AA seq
DB search
MENNITFQDFNISQKTLQAIQDMGFEEPTPIQVSTIPVILEGRDVTGQAQTGTGKTAAFG
VPAIEQVDVGNRETQVLVLSPTRELAIQTAEEFARLAKHHRGLNILPIYGGQPIERQFRG
LRRGAQVVVGTPGRVLDHLDRGTLSFAAVKMVVLDEADQMLDMGFREDIEKILDETPGDR
QTILFSATLPGPILEISKRFQKNPEVISVARREVTVPQIEQLYLEVRSRNKLEILCRLLD
MYDPELSLVFSNTKRGVDDLTAHLQARGYFAEGSTET
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggagaataacattaccttccaggatttcaatatctcgcaaaagacgcttcaggcgata
caagatatgggctttgaggagcccacaccaattcaggtaagcacaatacccgtgatactc
gaaggacgcgacgtcaccggtcaggcacagaccgggaccgggaagacggcggcgttcggc
gtcccggcgatcgagcaggtcgatgtggggaatcgggagacccaggtccttgtcctctcc
cccacccgggaactcgccatccagaccgccgaggagttcgcccgtctggcgaagcaccac
cgcggcctcaacatcctcccaatctatggcggccagccgatcgagcggcagttccgcggg
ttacgccgcggcgcccaggtcgtcgtcgggacgcccgggcgggtgctcgaccacctcgac
cgcgggaccctctcgtttgccgcggtgaagatggtcgtcctcgatgaggctgaccagatg
ctggacatgggcttccgggaggatatcgagaagatcctcgacgagaccccgggagaccgg
cagaccatcctcttctcggccaccctccccggaccgatccttgagatctcaaagaggttc
cagaagaaccccgaggtcatatcggtcgcacgccgggaagtgaccgtcccgcagatcgag
caactctaccttgaggtacggagcaggaacaaactcgagatcctctgccggctgctcgat
atgtatgaccctgaactctcgctcgtcttctcaaacaccaaacgtggcgtcgacgacctg
actgcccacctccaggcccggggctacttcgccgaaggctccacggagacatga
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