Methylocystis sp. MJC1: OGR47_00210
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Entry
OGR47_00210 CDS
T11178
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
memc Methylocystis sp. MJC1
Pathway
memc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
memc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OGR47_00210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
memc03019
]
OGR47_00210
03400 DNA repair and recombination proteins [BR:
memc03400
]
OGR47_00210
Enzymes [BR:
memc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OGR47_00210
Messenger RNA biogenesis [BR:
memc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OGR47_00210
DNA repair and recombination proteins [BR:
memc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OGR47_00210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
FdhE_C
Motif
Other DBs
NCBI-ProteinID:
UZX11932
LinkDB
All DBs
Position
32008..33705
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AA seq
565 aa
AA seq
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MPVFAQQGDVDARQLLRSIFGFPDFLPGQEEVIEAVLAGRDALAVMPTGSGKSLLYQLPA
AAGPGLVVVASPLIALMRDQLRALGARDIPAVALHSAQDDAEAIAALDAVSTGRARLLYA
APERLAQEATQNLLRKNRIRLFAVDEAHCVSHWGHDFRPDYRGLGEIAKKLGAPVLAVTA
TAGPRTRADIKRSLFAREPDVFIRSFARPNLALSFRRKRAELRQILRFIGRGGESGIVYC
NSRRKADALAADLAALGLDALPYHAGLDGYTRDAHQDAFFARRGVVMVATIAFGMGVDKP
DVRFVIHADLPTSIEGYYQEIGRAGRDGAPARALALFDPRELASRWRTPQVAPENEEAVG
DYARRQSMARLCVTPRCRFQTLLVEFGEKSSPCGRCDHCRGGPLAWPGRASALALHIQVA
AASRLAHFSGEEIDEPSPSPSALQEALFEPTAPHAKALTVAQTRLSARYRPNEAKSPKSA
ASPPVASPATRPLPPSLQRGRAESTTRCFKASRSRALFWASSRRRMPRGEPRAGRHVIPA
KAGIQSNIPDLVRSLDSEPVRNESA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgccggtttttgcgcagcaaggcgacgtcgacgcgcgccaattgctgcgcagcattttt
ggctttccggatttccttccgggccaagaggaagtgatcgaggccgttctcgccgggcgc
gacgctctcgcggtcatgccgacaggctccggcaaatccttgctttatcagttgcccgcg
gcggcggggccgggcttggtcgtcgtcgcctcgccgctcatcgcgctgatgcgcgaccag
ttgcgggcgctgggcgccagagacattcccgccgtcgccctccattccgcccaggatgac
gccgaggcgatcgccgccctcgatgccgtctcgaccgggcgggccaggcttctctacgcc
gcgccggagcggctggcccaggaggcgacgcagaatttgctgcgcaaaaaccgcatccgg
cttttcgcggtggacgaagcgcattgcgtctcgcattgggggcacgacttccgcccggac
tatcgcgggctcggcgaaatcgccaagaagctcggcgcgccggtgctcgccgtcaccgcc
accgccgggccgcgcacgcgcgcggacatcaaacgcagtctttttgcccgggagccggat
gtctttattcgttctttcgcccggcccaacctcgccctctctttccggcgcaagcgcgcg
gagctgcgccagatcctgcgcttcatcgggcggggcggggaaagcgggatcgtctattgc
aattcgcgccgcaaggcggatgcgctcgccgccgacctcgccgcgctcgggctcgacgct
ttgccctatcacgccggtctcgacggctatacgcgcgacgcgcatcaggacgcgtttttc
gctcgcaggggcgttgtcatggtcgcgaccatcgccttcggcatgggcgtggataagcca
gacgtgcgctttgtgattcacgccgatctgcctacgtcgatcgagggctactatcaggaa
atcggccgcgccgggcgcgatggggcgccggcgcgcgcccttgcgctgttcgatccgcgc
gaactggcgtcgcgctggcggacgccgcaggtcgcccctgaaaacgaagaagcggtgggg
gattatgcccgccgccaatccatggcgcggctctgtgtgacgccccgctgccgtttccag
acgctgcttgtggaattcggggaaaaaagctcgccttgcggccgatgcgatcattgccgg
ggcggcccgttggcctggccgggtcgggcgagcgctttggcgcttcacattcaagtcgcg
gcggcgagccggctcgcgcatttctcaggcgaggaaatcgacgagccgtcgccgtcgccc
tcggccctccaagaggcccttttcgaaccaaccgcgccccacgccaaagcgctcacggtt
gcgcagacgcggctcagcgcgcgctacaggccgaacgaggcaaaatcgccaaaaagcgcc
gcctcgccccccgtcgcatcgccagcgacgaggcccttgccgccctcgctacagcgcggc
cgcgccgaatcgacgacccgctgtttcaaggcgtcgaggagccgggcgcttttctgggcg
tcatcgagaaggcgaatgccgaggggtgagccgcgcgcgggccgccacgtcattcccgcg
aaagcgggaatccagagcaacattccagacttagtgcggtccctggattccgagcccgtc
cggaatgaaagcgcctga
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